Pairwise Alignments

Query, 635 a.a., beta-CASP ribonuclease aCPSF1 from Methanococcus maripaludis S2

Subject, 517 a.a., Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain from Pseudomonas stutzeri RCH2

 Score =  152 bits (383), Expect = 5e-41
 Identities = 130/479 (27%), Positives = 212/479 (44%), Gaps = 82/479 (17%)

Query: 198 HQTPESRILVDCGI---NIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHLDHCGFIPGLF 254
           H      +LVDCG+   N    D +A       EFS+  + A+VVTH H+DH G IP L 
Sbjct: 23  HMDASHSLLVDCGLFQGNETSSDGRAATGRLDIEFSLRTVQALVVTHVHIDHVGRIPYLL 82

Query: 255 RYGYDGPVYCTKPTRDLMTLLQKDYVDI-TEKEGKNVPYSSKDIKNCIKHTIPLDYGVTT 313
             GY GP+YC++P+  L+ ++ +D   +   ++ K V    K ++  ++   PL Y   +
Sbjct: 83  AAGYKGPIYCSEPSAKLLPIVLEDAFKLGFSRDQKAVERYLKLVEQRLR---PLPYQRWS 139

Query: 314 DIAPA----IKLTMHNAGHILGSAIAHCHV----GDGLYNVAYTGDIKFEASRLLEPAVC 365
            +        ++ +  AGHILGSA     +          + ++GD+    + LL P   
Sbjct: 140 TLLETEELIARVRLQRAGHILGSAYVEIDLTYPTSGESQRIVFSGDLGAAHAPLLMPPES 199

Query: 366 QFPRLETLIIESTYGGYDDVLPERDETEKEFLRVIAETIARKGKAIIPVFGIGRAQELML 425
              R + L++ESTYG  D +  +R    +    VI   +  +G  +IP F IGR QEL+ 
Sbjct: 200 P-ERADILVLESTYG--DRLHEDRTSRRQRLEAVIEHALQDQGTVLIPAFSIGRTQELLY 256

Query: 426 VLEE--------GYNQGIFNAPVYLDGMIWEATAIHTAYPEYLSKNMRNRIFHEGDNPF- 476
            LEE          +Q    A     G I  A A H+  P  LS   R R+    DN   
Sbjct: 257 ELEEIIHSKQQVSTDQSSLPADERARGGIESAGAPHSHSP--LSSEERARVERNSDNAHG 314

Query: 477 --------------------LSEVFKKVK---NTNDRRNI--------------MDSD-- 497
                                +E ++ ++   N   R  +              +DS   
Sbjct: 315 QLETDWPRLPIILDSPLATRFTEAYRSLQPYWNQEARERVEGGRNPLAFDNLIMIDSHAD 374

Query: 498 ------------EPGIILTTSGMLSGGPSVEYFKNLADDEKNSIVFVGYQSEGTLGRKIQ 545
                        P I++  +GM SGG  V Y K +  D ++ ++FVGYQ++GT G+ IQ
Sbjct: 375 HIAVVNHLTQTARPAIVIAGNGMCSGGRIVNYLKAMLHDPRHDVLFVGYQAQGTPGQAIQ 434

Query: 546 KGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLIKYLRKLKPIPDRILTVHGE 604
           +   +   +  +G  +   +   V ++ G+S H+D+K L++++  ++  P +I  VHGE
Sbjct: 435 QYGPKGGYVDLDG--ERFDIRARVTSIGGYSAHADQKGLVEFVTGMREWPTKIGVVHGE 491