Pairwise Alignments

Query, 635 a.a., beta-CASP ribonuclease aCPSF1 from Methanococcus maripaludis S2

Subject, 481 a.a., RNA-metabolising metallo-beta-lactamase (RefSeq) from Shewanella loihica PV-4

 Score =  174 bits (440), Expect = 1e-47
 Identities = 127/442 (28%), Positives = 221/442 (50%), Gaps = 31/442 (7%)

Query: 183 SFLGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHA 242
           SFLG ++EV  +C        ++L+DCG+ I      A  + +   F   EI AVV++HA
Sbjct: 6   SFLGAAQEVTGSCHLLDISGRQVLLDCGL-IQGGKLDALRNHEPFLFEPTEIHAVVLSHA 64

Query: 243 HLDHCGFIPGLFRYGYDGPVYCTKPTRDLMTLLQKDYV-----DITEKEGKNVP------ 291
           H+DH G +P L + G+ GP+Y  K T +L  ++ +D       D+     K V       
Sbjct: 65  HIDHSGRLPLLVKSGFTGPIYTHKATVELCEVMLRDAAMLQVRDVERLNKKRVKMDLPPL 124

Query: 292 ---YSSKDIKNCIKHTIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHVGDG--LYNV 346
              +  +D+   IK  + LDYG +  + P +   + +AGHILGSA+    +G+G     +
Sbjct: 125 EPLFDEEDVALVIKQFVALDYGQSVKVVPQLTACLSDAGHILGSAVVELWLGEGSERKKL 184

Query: 347 AYTGDIKFEASRLLEPAVCQFPRLETLIIESTYGGYDDVLPERDETEKEFLRVIAETIAR 406
            ++GD+      +L+         + +++ESTYG  D +    D+T  E   + A+TI  
Sbjct: 185 VFSGDLGRAGMPILDDPTL-IDDADLVLMESTYG--DRLHRSWDDTLAELKAIFAKTIKE 241

Query: 407 -KGKAIIPVFGIGRAQELMLVLE-EGYNQGIFNAPVYLDG-MIWEATAIHTAYPEYLSKN 463
            +G  ++P F +GRAQEL+ +         + N  + LD  M  +AT I+ A  + + ++
Sbjct: 242 SRGNILLPAFSVGRAQELLYLFHLYAKEWALSNWRICLDSPMAIKATQIYVANYQLMDED 301

Query: 464 M-RNRIFHEGDNPFLSEVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYFKNLA 522
             R      G +P LS V   + +T +   + +  +  II+  SGM +GG    + ++  
Sbjct: 302 FKRFTRLSPGKHPLLSNV-DFIDSTQESMELNEIHQGLIIIAGSGMCNGGRIRSHLEHNL 360

Query: 523 DDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRK 582
            + ++ ++  G+Q+ GT GR +  G + + + G++     + V   +HT+ G S H+D+ 
Sbjct: 361 ANPQSDVIICGFQALGTPGRLLVDGAESLTIHGRD-----IPVKAKIHTVGGLSAHADQA 415

Query: 583 QLIKYLRKLKPIPDRILTVHGE 604
           +LI + R  K  P  IL +HGE
Sbjct: 416 ELIHWYRHFKHTPPLIL-IHGE 436