Pairwise Alignments

Query, 635 a.a., beta-CASP ribonuclease aCPSF1 from Methanococcus maripaludis S2

Subject, 474 a.a., putative exonuclease of the beta-lactamase fold involved in RNA processing from Dechlorosoma suillum PS

 Score =  176 bits (446), Expect = 2e-48
 Identities = 133/448 (29%), Positives = 206/448 (45%), Gaps = 34/448 (7%)

Query: 180 VRTSFLGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVV 239
           ++ S  G + EV  +C   +    R LVDCG+     D     +  A  F +  +D V++
Sbjct: 7   IQVSMHGAAGEVTGSCTLVEMEGLRFLVDCGMFQGGGDAYG-KNQRALAFDVRHLDFVLL 65

Query: 240 THAHLDHCGFIPGLFRYGYDGPVYCTKPTRDLMTLLQKDYVDITEKE------------- 286
           THAH+DH G +P L   GY GP+Y T  T DL+ +L  D   I EKE             
Sbjct: 66  THAHIDHSGLLPRLAMLGYRGPIYATAATTDLLQVLLLDSAHIQEKESEWQLRRSHRSGR 125

Query: 287 ---GKNVP-YSSKDIKNCIKHTIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHV--G 340
              G   P Y+    + C+K    +DY      A  + +   +AGHILGSAI    +   
Sbjct: 126 GGRGLQPPLYTVTQAQECLKLLRAVDYDTPLHPASGVSVRFRDAGHILGSAILEVQIDTA 185

Query: 341 DGLYNVAYTGDIKFEASRLL-EPAVCQFPRLETLIIESTYGGYDDVLPERDETEKEFLRV 399
           DG   + ++GD+      +L +P        + L IESTYG  + V    ++TE E +R 
Sbjct: 186 DGPRKLVFSGDLGQPGRPVLRDPEF--IAEADLLCIESTYG--NRVHRPLEDTEAELIRA 241

Query: 400 IAETIARK-GKAIIPVFGIGRAQELMLVLEEGYNQG-IFNAPVYLDG-MIWEATAIHTAY 456
              T   K G  IIP F +GR QE++ VL     QG + +  +Y+D  M   AT I   Y
Sbjct: 242 FEHTFGEKRGNIIIPAFAVGRTQEILYVLGGLVRQGRLPHLKIYVDSPMADAATRITLKY 301

Query: 457 PEYLSKNMRNRIFHEGDNPFLSEVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVE 516
                   R+ +  +  NP    V     +  +   + D  E  +I++ SGM   G    
Sbjct: 302 RHLWDDETRDLMAWQEANPQAVRV-HFTADVEESMALNDIREGAVIISASGMCDAGRIKH 360

Query: 517 YFKNLADDEKNSIVFVGYQSEGTLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFS 576
           +        +++++  G+Q+ GTLGR++  G + + L G     + V V   VHT+ G S
Sbjct: 361 HLAYNLPRPESTVLITGFQAAGTLGRRLVDGARTVRLFG-----QIVPVRADVHTIGGLS 415

Query: 577 GHSDRKQLIKYLRKLKPIPDRILTVHGE 604
            H+D++ L+ ++      P ++  VHGE
Sbjct: 416 AHADQQALLDWVGHFSRAPGQVRVVHGE 443