Pairwise Alignments

Query, 288 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 318 a.a., cell wall-binding protein from Methanococcus maripaludis JJ

 Score =  184 bits (466), Expect = 3e-51
 Identities = 99/265 (37%), Positives = 159/265 (60%), Gaps = 2/265 (0%)

Query: 1   MDYFKIFAIFLVLIIPVS-ASDVVLVSDTVSDCASANIIPTINDSYVVINTSWGVYDDDV 59
           MD FK   + ++L++PVS ASDV+LVSD  +D   A  I    D +V++ + WG + +D 
Sbjct: 1   MDIFKKLVLLMILLMPVSYASDVILVSDNFADKLVAQTIADELDEFVLVESPWGNFSNDT 60

Query: 60  LEQILSENPKNVIIVGGTVAVPSEYDAQLEEAGITVERIYGIDRYQTNKNVILKFKDQIQ 119
           L +IL+E+P++V+I+GGTVAVP  Y   LE   ITVERI G DR+ TN   I +FKD   
Sbjct: 61  LNEILNESPEDVVIIGGTVAVPENYTTALENENITVERINGSDRFDTNNLTINRFKDLFV 120

Query: 120 NRNMWIVYGDDDRPEFCNAGDNIVILSNGTALSVDDEDLGDFDPGRVTVMENPVFNSNNV 179
           N+++ IVY +     + N  +   +L++G   SV +E + +     +TV+E+  +N + +
Sbjct: 121 NKSILIVYANGTNDTYGNITNVTFVLTDGNKTSVSEEVMENIS-DNITVLEDAAYNYSGL 179

Query: 180 RARLENYGFYVSTQSMPESVLNRTVYRKMEQLQLQIETMEQLGINCTPLRNDLTSINNSI 239
             RL+N+GF VST SMP +VL   + R+M  +Q  ++ +EQ GIN + L     ++ ++ 
Sbjct: 180 LKRLQNHGFQVSTASMPGNVLKAKIERRMNTIQTTLQALEQNGINISELDTKYGALTDAY 239

Query: 240 RNQNLEQAYAGELVLERNLLSYKHQ 264
              N   AYA  + LE +L + +++
Sbjct: 240 NGGNYSYAYALAIQLEDDLKAKQYK 264