Pairwise Alignments

Query, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis S2

Subject, 520 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella amazonensis SB2B

 Score =  395 bits (1016), Expect = e-114
 Identities = 223/500 (44%), Positives = 321/500 (64%), Gaps = 28/500 (5%)

Query: 6   LSLLPPVVAIGLALITKRVYMSLFLGILAGSLLYNNWNIVASASHIVNTIIGSVELTSIT 65
           LSLLPPVVAI LA++T++V +SL LGIL G+LL N++  +ASA  + + +         T
Sbjct: 11  LSLLPPVVAIVLAVLTRKVLLSLGLGILTGTLLLNDFAPLASAEFLAHRV---------T 61

Query: 66  GISSFTGVGNLWNLLILLFLVMLGILIALITRAGGALAYGNWASTKIKSKEGASLSTSLL 125
            +    G  N WNL IL FL++LG++ ALIT +G A A+ +WA  +I+ K  A L T  L
Sbjct: 62  NLVWSDGALNSWNLYILGFLLLLGMITALITVSGAARAFADWARQRIRCKRDAKLLTMFL 121

Query: 126 GILLFIDDYFNCLTVGTVMKPITDKFKISRAKLAYIIDSTAAPVCILMPVSSWFAAVVGN 185
           G ++FIDDYFN L VG++ +P+TD++ ISRAKLAY++DSTAAPVC++ PVSSW A ++  
Sbjct: 122 GCVVFIDDYFNSLVVGSISRPLTDRYYISRAKLAYLLDSTAAPVCVISPVSSWGAYIIAL 181

Query: 186 LGESGVGTGALSSMSPSG---VFFSAILYNTYALVALFMVSFIISFKKMDFGPMKVHEKV 242
           +G    G  A   MS +G   VF   I  N YA+ AL ++   ++F  +D GPMK HE+ 
Sbjct: 182 IG----GILASHGMSDAGHLSVFIQMIPMNFYAIFALLLL-LCVAFMGLDVGPMKTHEQN 236

Query: 243 ATETGDLFNGDAET-AAIESEIEPLSGGKISYLVLPLVVLILAIIFAFMISGGLFA---- 297
           A   G+L++    T     +E+     G I+ L +P+  L+ A +F FMI  G  A    
Sbjct: 237 AMR-GNLYDEAKGTPPGASAELPEADTGHIAGLFVPISTLVFATLF-FMIQSGASALADE 294

Query: 298 --GVGIIESFLSMDASWGLFWGGLVTLLFTVIYFIVSKAVPAKDIANLFAKGSKLMLPAI 355
                +I +F   D    LF+G LV L  T++  +V K + +K I     +G++ M+PAI
Sbjct: 295 KLPFSLIGAFEKTDVGGSLFFGALVGLGVTLVQAMVQK-LESKLIITALTQGARSMVPAI 353

Query: 356 TILILAWSLGSVIGDLGTGTYLSSLIQNSLPVQILPAILFLLSGFMAFSTGTSWGTFGIM 415
            IL+ AW++  +IG+L TG +++SL   ++P  +LPA++F+L+G  AF+TGTSWGTFGIM
Sbjct: 354 YILLFAWTIAGIIGELETGKFMASLASGNIPFALLPAVMFVLAGLTAFATGTSWGTFGIM 413

Query: 416 LPIAVPMAVGLGMPEFVVPFVAAVLGGAIYGDHSSPISDTTIMSSTGAGTKHIDHVQTQL 475
           LPIA  MA+G      ++P +AAVL GA++GDH SPISDTTI+SSTGA   HIDHV TQL
Sbjct: 414 LPIAADMAMG-SHTSMMLPMLAAVLAGAVFGDHCSPISDTTILSSTGASCHHIDHVVTQL 472

Query: 476 PYTTLIGIMAFLGYLIVGYT 495
           PY  ++ +++  GY ++G+T
Sbjct: 473 PYALIVAVISLAGYTVMGFT 492



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 40/184 (21%), Positives = 68/184 (36%), Gaps = 46/184 (25%)

Query: 252 GDAETAAIESEIEPLSGGKISYLVLPLVVLILAIIFAFMISGGLFAGVGIIESFLSMDAS 311
           G+ ET    +    L+ G I + +LP V+ +LA + AF                 +   S
Sbjct: 367 GELETGKFMAS---LASGNIPFALLPAVMFVLAGLTAF-----------------ATGTS 406

Query: 312 WGLFWGGLVTLLFTVIYFIVSKAVPAKDIANLFAKGSKLMLPAITILILAWSLGSVIGDL 371
           WG F  G++  +             A D+A      + +MLP +  ++     G     +
Sbjct: 407 WGTF--GIMLPI-------------AADMA--MGSHTSMMLPMLAAVLAGAVFGDHCSPI 449

Query: 372 GTGTYLSSL---------IQNSLPVQILPAILFLLSGFMAFSTGTSWGTFGIMLPIAVPM 422
              T LSS          +   LP  ++ A++ L    +   T + W  FG    + V  
Sbjct: 450 SDTTILSSTGASCHHIDHVVTQLPYALIVAVISLAGYTVMGFTESVWAGFGTSSVLFVLS 509

Query: 423 AVGL 426
            +GL
Sbjct: 510 VIGL 513