Pairwise Alignments

Query, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis S2

Subject, 439 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella loihica PV-4

 Score = 52.8 bits (125), Expect = 3e-11
 Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 20/199 (10%)

Query: 314 LFWGGLVT-LLFTVIYFIVSKAVPAKDIANLFAKGSKLMLPAITILILAWSLGSVIGDLG 372
           L+ G ++   L   I F  S A+      ++F +G ++M     I+I A    +V+   G
Sbjct: 254 LYTGSMIFGALIGFIIFSFSGALKHVADQDIFNQGVRMMANIGFIMISAAGFAAVVKATG 313

Query: 373 -TGTYLSSLIQNSLPVQILPAILFLLSGFM-AFSTGTSWGTFGIMLPIAVPMAVGLGMPE 430
             GT + SL       + L A L L+ G +     G+S+ T  I+  I VP+A+  G   
Sbjct: 314 DVGTLVDSLSHLIGDNRALAAFLMLVVGLLITMGIGSSFSTIPIIATIYVPLAISFG--- 370

Query: 431 FVVPFVAAVLG-GAIYGDHSSPISDTTIMSSTG--AGTKHIDHVQTQLPYTTLIGIMAFL 487
           F VP   A++G  A  GD  SP SD+T+  + G  A  +H DH++  +       I  F+
Sbjct: 371 FSVPATIALVGTAAALGDAGSPASDSTLGPTAGLNADGQH-DHIRDSV-------IPTFI 422

Query: 488 GYLIVGYTINLGYWVSGLI 506
            Y I    + +  W++ ++
Sbjct: 423 HYNI---PLLISGWIAAMV 438