Pairwise Alignments

Query, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis S2

Subject, 506 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella loihica PV-4

 Score = 64.3 bits (155), Expect = 1e-14
 Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 24/225 (10%)

Query: 275 VLPLVVLILAIIFAFMISGGLFAGVGIIESFLSMDASWGLFWGGLVTLLFTVIYFIVSKA 334
           +L  ++ I+A++     S  LF          S D+S+G     L+      +   V   
Sbjct: 28  LLDALIPIIALVCMLTASVYLF----------SSDSSYGANQIALIMAACITLVIGVKNG 77

Query: 335 VPAKDIANLFAKGSKLMLPAITILILAWSLGSVIGDLGTGTYLSSLIQNSLPV---QILP 391
              K++     K   L   A+ IL   +S+GS+IG       + ++I   + +       
Sbjct: 78  YSWKEMEAGIVKSVSLATGALLIL---FSVGSLIGTWILAGTVPTMIFYGMKILNPDYFY 134

Query: 392 AILFLLSGFMAFSTGTSW---GTFGIMLPIAVPMAVGLGMPEFVVPFVAAVLGGAIYGDH 448
           A   LL   +A S G+SW   GT GI L I V  A+GL     V     A++ GA +GD 
Sbjct: 135 AASCLLCAVVALSIGSSWTVAGTLGIAL-IGVAGAMGLS----VEITAGAIISGAYFGDK 189

Query: 449 SSPISDTTIMSSTGAGTKHIDHVQTQLPYTTLIGIMAFLGYLIVG 493
            SP+SDTT ++   AG++   H++  +  TT   ++A +G+L +G
Sbjct: 190 MSPMSDTTNLAPAVAGSELFGHIRHMVWTTTPSILLALIGFLFIG 234



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 39/204 (19%), Positives = 87/204 (42%), Gaps = 20/204 (9%)

Query: 4   GILSLLPPVVAIGLALITKRVYMSLFLGILAGSL---LYNNWNIVASAS-HIVNTIIGSV 59
           G+  LLP +V + LA      + ++ LG LAG++   L+    ++   +   + T++  V
Sbjct: 260 GLHLLLPLLVVLVLAYKKLPAFPTVILGTLAGAICAALFQFDGVIKFVNDDSLPTMVALV 319

Query: 60  E---------LTSITG---ISSFTGVGNLWNLLILLFLVMLGILIALITRAGGALAYGNW 107
           +          T+ TG   + S    G + +++  ++L++  +    +    G L     
Sbjct: 320 KGIWVAMFDGYTANTGDKTLDSLLSRGGMSSMVNTVWLILCAMAFGGVMEKTGLLQRLLQ 379

Query: 108 ASTKIKSKEGASLSTSLLGI----LLFIDDYFNCLTVGTVMKPITDKFKISRAKLAYIID 163
              ++    G+ + T+L       L+  D +   L  G ++K   +K  ++   L+  ++
Sbjct: 380 GVLRLVKSSGSLIITTLASCIGANLITGDQFIAILLPGRMLKVEYEKHGLAPVNLSRALE 439

Query: 164 STAAPVCILMPVSSWFAAVVGNLG 187
            +A     L+P ++  A +   LG
Sbjct: 440 DSATITSPLVPWNTCGAYMASTLG 463