Pairwise Alignments

Query, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis S2

Subject, 439 a.a., membrane protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.5 bits (132), Expect = 4e-12
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 13/183 (7%)

Query: 295 LFAGVGIIESFLSMDASWGLFWGGLVTLLFTVIYFIVSKAVPAKDIANLFAKGSKLMLPA 354
           + A + I+ +      +  + +G LV  +     F  S A+      ++F +G ++M   
Sbjct: 240 VIAALAILATLFVQLETDSMIFGALVGFMI----FSFSGALKHVADQDIFTQGVRMMANI 295

Query: 355 ITILILAWSLGSVIGDLG-TGTYLSSLIQNSLPVQILPAILFLLSGFM-AFSTGTSWGTF 412
             I+I A    +V+ + G  GT +SSL       + L A L L+ G +     G+S+ T 
Sbjct: 296 GFIMISAAGFAAVVKETGEVGTLVSSLSSLIGDNKALAAFLMLVVGLLITMGIGSSFSTI 355

Query: 413 GIMLPIAVPMAVGLGMPEFVVPFVAAVLG-GAIYGDHSSPISDTTIMSSTG--AGTKHID 469
            I+  I VP+A+  G   F VP   A++G  A  GD  SP SD+T+  ++G  A  +H D
Sbjct: 356 PIIATIYVPLALSFG---FSVPATIALVGTAAALGDAGSPASDSTLGPTSGLNADGQH-D 411

Query: 470 HVQ 472
           H++
Sbjct: 412 HIR 414



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 21/117 (17%)

Query: 167 APVCILMPVSSWFAAVVGNLGESGVGTGALSSMSPSGVFFSAIL---------------Y 211
           A +  +M  ++ FAAVV   GE G    +LSS+       +A L               +
Sbjct: 293 ANIGFIMISAAGFAAVVKETGEVGTLVSSLSSLIGDNKALAAFLMLVVGLLITMGIGSSF 352

Query: 212 NTYALVALFMVSFIISFKKMDFGPMKVHEKVATETGDLFNGDAETAAIESEIEPLSG 268
           +T  ++A   V   +SF         V   +A        GDA + A +S + P SG
Sbjct: 353 STIPIIATIYVPLALSF------GFSVPATIALVGTAAALGDAGSPASDSTLGPTSG 403