Pairwise Alignments

Query, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis S2

Subject, 460 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  239 bits (609), Expect = 2e-67
 Identities = 162/498 (32%), Positives = 260/498 (52%), Gaps = 56/498 (11%)

Query: 6   LSLLPPVVAIGLALITKRVYMSLFLGILAGSLLYNNWNIVASASHIVNTIIGSVELTSIT 65
           LSL+PPVV + LA+  +R  +SL +G + G LL +              ++ +   TS+ 
Sbjct: 7   LSLIPPVVVLVLAIWLRRPILSLIIGAVTGFLLLDP-----------TQVLNNFARTSLK 55

Query: 66  GISSFTGVGNLWNLLILLFLVMLGILIALITRAGGALAYGNWASTKIKSKEGASLSTSLL 125
            ++  T +G  W   ++L     G LIAL+ R GGALA+G  A    K    +   T +L
Sbjct: 56  VMTDET-IG--W---LILVCGCFGALIALLVRTGGALAFGRNALKFAKGPRSSLFMTFIL 109

Query: 126 GILLFIDDYFNCLTVGTVMKPITDKFKISRAKLAYIIDSTAAPVCILMPVSSWFAAVVGN 185
           GI++FIDDY N LTVG  MK +TDKFK+SR  LAY++DSTAAPVC+L+P+S+W     G 
Sbjct: 110 GIVIFIDDYLNALTVGETMKRVTDKFKVSREMLAYVVDSTAAPVCVLVPLSTWAVFFGGL 169

Query: 186 LGESGVGTGALSSMSPSGVFFSAILYNTYALVALFMVSFIISFKKMDFGPMK------VH 239
           L ++GV     +      V+  AI Y  YA +A+ MV  +        GPMK       +
Sbjct: 170 LVDNGVA----AEGQGISVYMQAIPYMLYAWLAVAMVLLVSLGIVPAIGPMKKAQLRAAN 225

Query: 240 EKVATETGDL----FNGDAETAAIESEIEPLSG-GKISYLVLPLVVLILAIIFAFMISGG 294
            + A    DL     + +   AAIE E +     GK+   ++P+++L+      F +   
Sbjct: 226 GEPAEAQVDLDQVQTSDEYAIAAIEEEFKHADNQGKLHNFLVPILLLV-----GFTV--- 277

Query: 295 LFAGVGIIESFLSMDASWGLFWGGLVTLLFTVIYFIVSKAVPAKDIANLFAKGSKLMLPA 354
                     +  +D   GL    L TL+ T+ Y+ V + +P  ++ +    G K MLPA
Sbjct: 278 ----------YFDIDVWKGL----LATLVITLPYYAVQRLMPLSEMMDQMIDGFKSMLPA 323

Query: 355 ITILILAWSLGSVIGDLGTGTYLSSLIQNSLPVQILPAILFLLSGFMAFSTGTSWGTFGI 414
           I  +I A+    V   +    Y+   +   +  Q+LPA++FL    +AF+TG+SWG F +
Sbjct: 324 IGTVIAAFVFKDVCDAMLLPQYVIESLSPFMTPQLLPAVVFLSMAILAFATGSSWGIFAV 383

Query: 415 MLPIAVPMAVGLGMPEFVVPFVAAVLGGAIYGDHSSPISDTTIMSSTGAGTKHIDHVQTQ 474
            +PI +P+A  +G    +V  + A+L  + +G  +   SD+T++++ G+G   + H  TQ
Sbjct: 384 TIPIVMPLAQSVGADIPLV--IGALLSASSFGSQACFYSDSTVLAAQGSGCNLVSHAVTQ 441

Query: 475 LPYTTLIGIMAFLGYLIV 492
           LPY  +  ++AF G++++
Sbjct: 442 LPYALIAAVIAFFGFILI 459