Pairwise Alignments

Query, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis S2

Subject, 445 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella sp. ANA-3

 Score = 61.6 bits (148), Expect = 6e-14
 Identities = 53/218 (24%), Positives = 98/218 (44%), Gaps = 6/218 (2%)

Query: 277 PLVVLILAIIFAFMISGGLFAGVGIIESFLSMDASWGLFWGGLVTLLFTVIYFIVSKAVP 336
           P   + L  +F F+    LF G G+      +D ++      +  L   ++  ++SK   
Sbjct: 13  PASFIALLPLFVFL---SLFIGAGVYFQSQGVDFAFYQLPSVIAILPAIILALVLSKQKL 69

Query: 337 AKDIANLFAK-GSKLMLPAITILILAWSLGSVIGDLGTGTYLSSLIQNSLPVQILPAILF 395
            + I       G   ++    I +LA    +V    G      +L  + +P  +L    F
Sbjct: 70  NQAIDTFIGGIGHSNIIAMCLIYLLAGGFAAVAKATGGVDATVALGLSLIPSNLLLPGFF 129

Query: 396 LLSGFMAFSTGTSWGTFGIMLPIAVPMAVGLGMPEFVVPFVAAVLGGAIYGDHSSPISDT 455
           +++ F+A + GTS GT   + PIA+ +A    +   ++    AV+ GA++GD+ S ISDT
Sbjct: 130 VIAAFIATAMGTSMGTIAAVAPIALGVADQAQIDYALM--AGAVMSGALFGDNLSIISDT 187

Query: 456 TIMSSTGAGTKHIDHVQTQLPYTTLIGIMAFLGYLIVG 493
           TI ++   G    D  +  L +     ++ F+ ++I G
Sbjct: 188 TIAATRTQGCDMKDKFRENLIFAIPASLLTFVAFVIAG 225



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 52/242 (21%), Positives = 101/242 (41%), Gaps = 46/242 (19%)

Query: 2   DFGILSLLPPVVAIGLALITKRVYMSLFLGILAGSLLYNNWNIVASASHIVNTIIGSVEL 61
           D   + ++P +  + LA+    V++ L LGIL           +A A+  +    G ++ 
Sbjct: 235 DIDFIKVIPYLTILVLAVAGLNVFVVLTLGIL-----------LAGAAGFLTMDYGVIQF 283

Query: 62  TSITGISSFTGVGNLWNLLILLFLVMLGILIALITRAGGALAYGNWASTKI-----KSKE 116
               G   + G  N+  + IL  LV  G L AL+ + GG LA+ +    K+     K++ 
Sbjct: 284 ----GKDIYAGFSNMQEIFILSMLV--GGLAALMQQQGG-LAFVSKQIEKLITRFSKAQG 336

Query: 117 GASLSTSLLGILLFIDDYFNCLT--------VGTVMKPITDKFKISRAKLAYIIDSTAAP 168
            AS   + LG+   +    +C+          G + K + +K  +S  + A ++D  A  
Sbjct: 337 EASCRAAELGMAGIVAVTNSCVANNTVSIVVTGDIAKDLAEKHGVSPKRAASVLDIFACI 396

Query: 169 VCILMPVSSWFAAVVGNLGESGVGTGALSSMSPSGVFFSAILYNTYALVALFMVSFIISF 228
           +  L+P            G   +   +  S++P     +A+ +  Y ++   +   I+ F
Sbjct: 397 IQGLIP-----------YGAQALLIASTFSITP----LAAVSHAWYCMILAAVAIAIVIF 441

Query: 229 KK 230
           +K
Sbjct: 442 RK 443