Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 347 a.a., Tfp pilus assembly protein PilF from Pseudomonas stutzeri RCH2

 Score = 67.8 bits (164), Expect = 5e-16
 Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 29/280 (10%)

Query: 23  SSSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFG 82
           S+    ++    Y   D + S+  + +A+EL+P    +L ++G+   E  N  +AE+ F 
Sbjct: 48  SADQAMQLAALAYRAGDLDQSLFQYLRAMELEPKRQDALVWVGRIHRERGNDQLAELAFT 107

Query: 83  RLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDN-----SVGKTWFYKGI--- 134
            ++  +P+N  AL  +G + LSQ + D+A    +K + +D      ++G+T         
Sbjct: 108 EVLAKQPDNLDALTEMGMLSLSQRDQDRARGLLHKAVSLDQRRQGVAIGETLPEPQALNV 167

Query: 135 -------CLKMLGNYDESVEAFDKSTGDYETL-------FLTWNDLGYCYYQNGEYDKAI 180
                      LG   +    F  S G Y+          L  N LGY YY  G +  A 
Sbjct: 168 DQQSPLRLYNALGVLADLNNRFALSEGYYQLALKIEPRSLLAQNSLGYSYYLAGRWQDAE 227

Query: 181 GCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYK 240
             F +AL  +G+        GL   +  +Y  A+  F++   + +   D     G  C  
Sbjct: 228 RTFRRALDQNGSYTPLWRNYGLLLARTARYEEALSAFEQIGSRAQASNDV----GYVCLV 283

Query: 241 SKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEK 280
             K   A   F  AL+    +P  Y    ++L R+ +  K
Sbjct: 284 EGKLDEAEQFFRSALE---QSPSHYLTAWENLERVRQLRK 320



 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 43/220 (19%), Positives = 94/220 (42%), Gaps = 14/220 (6%)

Query: 171 YQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDA 230
           Y+ G+ D+++  + +A+ L+   + +L   G    ++    +A   F + + +     DA
Sbjct: 60  YRAGDLDQSLFQYLRAMELEPKRQDALVWVGRIHRERGNDQLAELAFTEVLAKQPDNLDA 119

Query: 231 IYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIE 290
           +   G+     +    A     KA+ L+               R G      L   +A+ 
Sbjct: 120 LTEMGMLSLSQRDQDRARGLLHKAVSLDQ-------------RRQGVAIGETLPEPQALN 166

Query: 291 LDSKNPI-FWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNES 349
           +D ++P+  ++ LG+  +  N +  S   Y+ A+++ P   ++ ++LGY  Y    + ++
Sbjct: 167 VDQQSPLRLYNALGVLADLNNRFALSEGYYQLALKIEPRSLLAQNSLGYSYYLAGRWQDA 226

Query: 350 ISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDK 389
              F ++LD N +    W   G        YE+AL  +++
Sbjct: 227 ERTFRRALDQNGSYTPLWRNYGLLLARTARYEEALSAFEQ 266