Pairwise Alignments
Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2
Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942
Score = 90.1 bits (222), Expect = 9e-23
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 233 NKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELD 292
N+GI + +++ A++ + AL++ +A L LG +AV +Y++A+ +D
Sbjct: 35 NRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALAID 94
Query: 293 SKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISY 352
+ P W+ G+ L +I SY++A+ L +W+N G+ ++ Y E++ +
Sbjct: 95 RQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQQGRYREAVRH 154
Query: 353 FEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDP 395
+E+S+ ++ + AW LG YL + ++AL C D+AI + P
Sbjct: 155 YEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQP 197
Score = 78.6 bits (192), Expect = 3e-19
Identities = 55/281 (19%), Positives = 131/281 (46%), Gaps = 8/281 (2%)
Query: 85 IELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDE 144
+E+ P+ + AL + + +A+ Y + L ID + W +GI L+ LG ++
Sbjct: 57 LEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLED 116
Query: 145 SVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCC 204
++ ++ ++ W + G+ +Q G Y +A+ +++++ +D + + G
Sbjct: 117 AIASYQQAIALAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIY 176
Query: 205 EKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYC 264
+Q A+ C D+A+ A +G + Y +Y+ A++ +E A L +
Sbjct: 177 LSVDQPDQALRCLDQAIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLL 236
Query: 265 YFYKADSLNRLGEYEKAVLNYKKAI-----ELDSKNPIFWSGLGLSYNYLNEYNSSIQSY 319
+ +L +L YE+A+ +Y + E ++ + GL + YL ++ +++ ++
Sbjct: 237 SIQRGHTLAQLERYEEALASYAAILPQLTGEAAAEVAYY---QGLVWAYLQDWTAALAAF 293
Query: 320 EKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLN 360
++A+ NP+ +W N L + +I+ ++++ L+
Sbjct: 294 DQAIAGNPDLAEAWYNRAALHARLDQPVAAIADLQQAIALD 334
Score = 77.8 bits (190), Expect = 5e-19
Identities = 43/193 (22%), Positives = 92/193 (47%)
Query: 198 NGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDL 257
N +G+ E+ ++T A+ ++ A+ +A+ N+ I + A+ +E+AL +
Sbjct: 34 NNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALAI 93
Query: 258 NNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQ 317
+ P + + L +LG E A+ +Y++AI L + W+ G + Y +++
Sbjct: 94 DRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQQGRYREAVR 153
Query: 318 SYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLL 377
YE++V ++P+ +W LG + ++++ ++++ L AW G++ L
Sbjct: 154 HYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQQATAWTWRGHALYNL 213
Query: 378 KNYEKALMCYDKA 390
Y AL Y+ A
Sbjct: 214 GQYAAALTSYENA 226
Score = 76.3 bits (186), Expect = 1e-18
Identities = 49/225 (21%), Positives = 107/225 (47%)
Query: 163 WNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVI 222
WN+ G + + +A+ ++ AL + + +LN + + E + AVE +++A+
Sbjct: 33 WNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVESYEQALA 92
Query: 223 QDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAV 282
D + N+GI K + AI+ +++A+ L + +L + G Y +AV
Sbjct: 93 IDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQQGRYREAV 152
Query: 283 LNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYK 342
+Y++++ +D W LG Y +++ + +++ ++A+ L P+ +W+ G+ Y
Sbjct: 153 RHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQQATAWTWRGHALYN 212
Query: 343 NKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCY 387
Y +++ +E + L G++ L+ YE+AL Y
Sbjct: 213 LGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALASY 257
Score = 70.9 bits (172), Expect = 6e-17
Identities = 68/317 (21%), Positives = 131/317 (41%), Gaps = 16/317 (5%)
Query: 88 EPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVE 147
EP N + G + + +AL YN LEI + + I L+ LG E+VE
Sbjct: 26 EPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLGRLPEAVE 85
Query: 148 AFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKK 207
+++++ WN+ G + G + AI + +A+ L + + G ++
Sbjct: 86 SYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQAWANCGFALWQQ 145
Query: 208 EQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFY 267
+Y AV ++++V D A G + A+ C ++A+ L + +
Sbjct: 146 GRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQQATAWTW 205
Query: 268 KADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSY-------- 319
+ +L LG+Y A+ +Y+ A L + + G + L Y ++ SY
Sbjct: 206 RGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALASYAAILPQLT 265
Query: 320 -EKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLK 378
E A E+ + W+ YLQ ++ +++ F++++ N + AW + L
Sbjct: 266 GEAAAEVAYYQGLVWA---YLQ----DWTAALAAFDQAIAGNPDLAEAWYNRAALHARLD 318
Query: 379 NYEKALMCYDKAIEIDP 395
A+ +AI +DP
Sbjct: 319 QPVAAIADLQQAIALDP 335
Score = 50.8 bits (120), Expect = 6e-11
Identities = 38/181 (20%), Positives = 86/181 (47%), Gaps = 2/181 (1%)
Query: 80 YFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKML 139
++ + + ++P+ A + LG+I+LS ++ D+AL ++ + + W ++G L L
Sbjct: 154 HYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIALQPQQATAWTWRGHALYNL 213
Query: 140 GNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKAL-TLDGNLKYSL- 197
G Y ++ +++ + + L G+ Q Y++A+ + L L G +
Sbjct: 214 GQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEALASYAAILPQLTGEAAAEVA 273
Query: 198 NGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDL 257
+GL + +T A+ FD+A+ + +A YN+ + + AI+ ++A+ L
Sbjct: 274 YYQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYNRAALHARLDQPVAAIADLQQAIAL 333
Query: 258 N 258
+
Sbjct: 334 D 334
Score = 45.1 bits (105), Expect = 3e-09
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 279 EKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGY 338
E + Y + + +N W+ G+ LN + ++ SY A+E+ P+ + +N
Sbjct: 13 EALLAAYDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAI 72
Query: 339 LQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDPLY 397
+ E++ +E++L ++ WN G L E A+ Y +AI + Y
Sbjct: 73 VLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHY 131
Score = 44.7 bits (104), Expect = 5e-09
Identities = 40/212 (18%), Positives = 89/212 (41%), Gaps = 6/212 (2%)
Query: 24 SSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGR 83
+ +A G + + Y +V+ +++++ +DPD + + LG+ + D A +
Sbjct: 132 AQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQ 191
Query: 84 LIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYD 143
I L+P+ A G + +Y AL Y + + +G L L Y+
Sbjct: 192 AIALQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYE 251
Query: 144 ESVEAF----DKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNG 199
E++ ++ + TG+ + L + Y Q ++ A+ FD+A+ + +L +
Sbjct: 252 EALASYAAILPQLTGEAAAEVAYYQGLVWAYLQ--DWTAALAAFDQAIAGNPDLAEAWYN 309
Query: 200 KGLCCEKKEQYTMAVECFDKAVIQDECYYDAI 231
+ + +Q A+ +A+ D Y ++
Sbjct: 310 RAALHARLDQPVAAIADLQQAIALDPDTYRSL 341
Score = 44.3 bits (103), Expect = 6e-09
Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 18/186 (9%)
Query: 22 ESSSTYAEMGEQCYLEKDY-ETSVKCFDKALELDPDNTC-------SLEYLGKYSMENRN 73
+ SS + ++G Q YL D + +++C D+A+ L P +L LG+Y+ +
Sbjct: 164 DQSSAWRQLG-QIYLSVDQPDQALRCLDQAIALQPQQATAWTWRGHALYNLGQYAAALTS 222
Query: 74 LDMAEIYFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLE--IDNSVGKTWFY 131
+ AE+ R + L + L L E Y++AL Y +L + + +Y
Sbjct: 223 YENAELLGDRPLLLSIQRGHTLAQL-------ERYEEALASYAAILPQLTGEAAAEVAYY 275
Query: 132 KGICLKMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDG 191
+G+ L ++ ++ AFD++ L W + + + + AI +A+ LD
Sbjct: 276 QGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYNRAALHARLDQPVAAIADLQQAIALDP 335
Query: 192 NLKYSL 197
+ SL
Sbjct: 336 DTYRSL 341