Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 255 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 6/123 (4%)

Query: 276 GEYEKAVLNYKKAIELDSKNPIFWSGLG---LSYNYLNEYNSSIQSYEKAVELNPEDDIS 332
           GE+ +A   + +AI L   N   WS  G   +S N+L E   +I  Y ++V L P     
Sbjct: 39  GEFGRAEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEE---AIADYNESVRLAPNAPDP 95

Query: 333 WSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIE 392
           + N G      + ++++I+ ++++L  +  +  A N LGN  L L  YE+AL  ++ A  
Sbjct: 96  YLNRGTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVRLSLGEYEQALSEFETASR 155

Query: 393 IDP 395
           + P
Sbjct: 156 LAP 158



 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 26/126 (20%), Positives = 60/126 (47%)

Query: 229 DAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKA 288
           D +Y   +      ++  A   + +A+ L   N   +  + +        E+A+ +Y ++
Sbjct: 26  DELYQSALEASYRGEFGRAEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEEAIADYNES 85

Query: 289 IELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNE 348
           + L    P  +   G ++  L E++ +I  Y++A++ +P D  + +NLG ++     Y +
Sbjct: 86  VRLAPNAPDPYLNRGTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVRLSLGEYEQ 145

Query: 349 SISYFE 354
           ++S FE
Sbjct: 146 ALSEFE 151



 Score = 41.2 bits (95), Expect = 3e-08
 Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 77  AEIYFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICL 136
           AE  +   I L P+N     + G + +SQ   ++A+  YN+ + +  +    +  +G   
Sbjct: 44  AEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEEAIADYNESVRLAPNAPDPYLNRGTAW 103

Query: 137 KMLGNYDESV----EAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTL 189
           + L  +D+++    +A   S GD        N+LG      GEY++A+  F+ A  L
Sbjct: 104 EGLQEWDKAIADYQQALQFSPGD----AAAHNNLGNVRLSLGEYEQALSEFETASRL 156



 Score = 36.6 bits (83), Expect = 8e-07
 Identities = 22/104 (21%), Positives = 51/104 (49%)

Query: 247 AISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSY 306
           AI+ + +++ L  + P  Y  +  +   L E++KA+ +Y++A++    +    + LG   
Sbjct: 78  AIADYNESVRLAPNAPDPYLNRGTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVR 137

Query: 307 NYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESI 350
             L EY  ++  +E A  L P    + +N+    ++    +++I
Sbjct: 138 LSLGEYEQALSEFETASRLAPGFAFAGANVALTLFQLDRTSDAI 181



 Score = 33.5 bits (75), Expect = 7e-06
 Identities = 22/115 (19%), Positives = 47/115 (40%)

Query: 39  DYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSL 98
           ++  + + + +A+ L PDN       G   +   +L+ A   +   + L P       + 
Sbjct: 40  EFGRAEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEEAIADYNESVRLAPNAPDPYLNR 99

Query: 99  GEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDKST 153
           G      +E+DKA+  Y + L+            G     LG Y++++  F+ ++
Sbjct: 100 GTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVRLSLGEYEQALSEFETAS 154



 Score = 30.8 bits (68), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 66/154 (42%)

Query: 174 GEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYN 233
           GE+ +A   + +A+ L  +     + +G     +     A+  ++++V       D   N
Sbjct: 39  GEFGRAEQLWSEAIALAPDNAALWSNRGNVRVSQNHLEEAIADYNESVRLAPNAPDPYLN 98

Query: 234 KGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDS 293
           +G +    +++  AI+ +++AL  +  +   +    +    LGEYE+A+  ++ A  L  
Sbjct: 99  RGTAWEGLQEWDKAIADYQQALQFSPGDAAAHNNLGNVRLSLGEYEQALSEFETASRLAP 158

Query: 294 KNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNP 327
                 + + L+   L+  + +IQ     V   P
Sbjct: 159 GFAFAGANVALTLFQLDRTSDAIQRMRSLVRKYP 192