Pairwise Alignments
Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2
Subject, 359 a.a., TPR repeat from Synechococcus elongatus PCC 7942
Score = 60.8 bits (146), Expect = 6e-14
Identities = 36/165 (21%), Positives = 80/165 (48%)
Query: 231 IYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIE 290
+ + G K ++++ A+ +++A ++ + LG++ +A L++++AI
Sbjct: 41 LLDAGSEAVKQRRWAEALGLYQQAQLIDGQDARIASAIGYLYTELGDFRQAALSFERAIA 100
Query: 291 LDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESI 350
+DS+ F G +Y L EY ++ + YE+++ L+ + ++ L +Q + N +I
Sbjct: 101 MDSQTAAFAFGAATAYANLGEYAAAERYYEQSLRLDNKRAEAYRGLATVQQRRGNLVGAI 160
Query: 351 SYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDP 395
+ +++ L NN N +G YL + + AL A + P
Sbjct: 161 NTYQRWQQLEPNNWQPRNEMGKIYLQQRQFTNALQVLQAATRLAP 205
Score = 49.3 bits (116), Expect = 2e-10
Identities = 31/145 (21%), Positives = 64/145 (44%)
Query: 251 FEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLN 310
FE+A+ +++ F A + LGEY A Y++++ LD+K + GL
Sbjct: 95 FERAIAMDSQTAAFAFGAATAYANLGEYAAAERYYEQSLRLDNKRAEAYRGLATVQQRRG 154
Query: 311 EYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGL 370
+I +Y++ +L P + + +G + + + + ++ + + L ++ L
Sbjct: 155 NLVGAINTYQRWQQLEPNNWQPRNEMGKIYLQQRQFTNALQVLQAATRLAPREADIYSNL 214
Query: 371 GNSYLLLKNYEKALMCYDKAIEIDP 395
+ L L N AL +I +DP
Sbjct: 215 AIAQLGLNNPRAALTSLQSSISLDP 239
Score = 42.0 bits (97), Expect = 3e-08
Identities = 53/282 (18%), Positives = 106/282 (37%), Gaps = 2/282 (0%)
Query: 95 LKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDKSTG 154
L G + Q + +AL Y + ID + G LG++ ++ +F+++
Sbjct: 41 LLDAGSEAVKQRRWAEALGLYQQAQLIDGQDARIASAIGYLYTELGDFRQAALSFERAIA 100
Query: 155 -DYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMA 213
D +T + Y GEY A ++++L LD + G +++ A
Sbjct: 101 MDSQTAAFAFG-AATAYANLGEYAAAERYYEQSLRLDNKRAEAYRGLATVQQRRGNLVGA 159
Query: 214 VECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLN 273
+ + + + + G + ++++ A+ + A L Y A +
Sbjct: 160 INTYQRWQQLEPNNWQPRNEMGKIYLQQRQFTNALQVLQAATRLAPREADIYSNLAIAQL 219
Query: 274 RLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISW 333
L A+ + + +I LD +NP G Y L + ++ ++Y +A ELN +
Sbjct: 220 GLNNPRAALTSLQSSISLDPRNPRTLLKAGDIYLVLGDREAANRNYRRAFELNRNSAKTL 279
Query: 334 SNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYL 375
+ + + Y +L L N LG +YL
Sbjct: 280 DRYTQILLDQGDATLATVYLRDALRLEPRNPDFHLRLGLAYL 321
Score = 38.5 bits (88), Expect = 3e-07
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 14/124 (11%)
Query: 285 YKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDI-------SWSNLG 337
Y++A +D ++ S +G Y L ++ + S+E+A+ ++ + +++NLG
Sbjct: 61 YQQAQLIDGQDARIASAIGYLYTELGDFRQAALSFERAIAMDSQTAAFAFGAATAYANLG 120
Query: 338 YLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDPLY 397
Y + Y+E+SL L++ A+ GL N A+ Y + +++P
Sbjct: 121 -------EYAAAERYYEQSLRLDNKRAEAYRGLATVQQRRGNLVGAINTYQRWQQLEPNN 173
Query: 398 NEPK 401
+P+
Sbjct: 174 WQPR 177
Score = 38.1 bits (87), Expect = 4e-07
Identities = 49/268 (18%), Positives = 92/268 (34%), Gaps = 34/268 (12%)
Query: 25 STYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRL 84
S + G + ++ + ++ + +A +D + +G E + A + F R
Sbjct: 39 SRLLDAGSEAVKQRRWAEALGLYQQAQLIDGQDARIASAIGYLYTELGDFRQAALSFERA 98
Query: 85 IELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDE 144
I ++ + + + EY A YY + L +DN + Y+G
Sbjct: 99 IAMDSQTAAFAFGAATAYANLGEYAAAERYYEQSLRLDNKRAEA--YRG----------- 145
Query: 145 SVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCC 204
L + G AI + + L+ N N G
Sbjct: 146 ---------------------LATVQQRRGNLVGAINTYQRWQQLEPNNWQPRNEMGKIY 184
Query: 205 EKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYC 264
++ Q+T A++ A D N I+ A++ + ++ L+ NP
Sbjct: 185 LQQRQFTNALQVLQAATRLAPREADIYSNLAIAQLGLNNPRAALTSLQSSISLDPRNPRT 244
Query: 265 YFYKADSLNRLGEYEKAVLNYKKAIELD 292
D LG+ E A NY++A EL+
Sbjct: 245 LLKAGDIYLVLGDREAANRNYRRAFELN 272
Score = 37.0 bits (84), Expect = 9e-07
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 23 SSSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENR--NLDMAEIY 80
+++ YA +GE E+ YE S++ +K E Y G +++ R NL A
Sbjct: 112 AATAYANLGEYAAAERYYEQSLRLDNKRAEA---------YRGLATVQQRRGNLVGAINT 162
Query: 81 FGRLIELEPENKCALKSLGEIHLSQEEYDKAL 112
+ R +LEP N +G+I+L Q ++ AL
Sbjct: 163 YQRWQQLEPNNWQPRNEMGKIYLQQRQFTNAL 194
Score = 28.5 bits (62), Expect = 3e-04
Identities = 22/100 (22%), Positives = 39/100 (39%)
Query: 29 EMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELE 88
EMG+ ++ + +++ A L P L + N A I L+
Sbjct: 179 EMGKIYLQQRQFTNALQVLQAATRLAPREADIYSNLAIAQLGLNNPRAALTSLQSSISLD 238
Query: 89 PENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKT 128
P N L G+I+L + + A Y + E++ + KT
Sbjct: 239 PRNPRTLLKAGDIYLVLGDREAANRNYRRAFELNRNSAKT 278