Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 287 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 27/87 (31%), Positives = 51/87 (58%)

Query: 309 LNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWN 368
           LN+ + +I + EKA +L+P +      LG  +++  NY+E+ S+ ++ L +  ++  A  
Sbjct: 89  LNQLDPAIAALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPDSSGALF 148

Query: 369 GLGNSYLLLKNYEKALMCYDKAIEIDP 395
            LGN YL+ K Y  A+  + KA+++ P
Sbjct: 149 DLGNVYLIQKQYPPAIAAFQKAVQVKP 175



 Score = 53.9 bits (128), Expect = 6e-12
 Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 4/118 (3%)

Query: 247 AISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAV--LNYKKAIELDSKNPIFWSGLGL 304
           AI+  EKA  L+   P   F    +  R G Y +A   L    AI+ DS   +F   LG 
Sbjct: 95  AIAALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPDSSGALF--DLGN 152

Query: 305 SYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSN 362
            Y    +Y  +I +++KAV++ P+   + +NLG + Y+  + N++++Y+ ++++L+ +
Sbjct: 153 VYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYWNRAIELSKD 210



 Score = 47.4 bits (111), Expect = 5e-10
 Identities = 25/125 (20%), Positives = 60/125 (48%)

Query: 30  MGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEP 89
           +G   + + +Y  +     + L + PD++ +L  LG   +  +    A   F + ++++P
Sbjct: 116 LGSARFRQGNYSEAASFLQRGLAIKPDSSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKP 175

Query: 90  ENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAF 149
           +   A+ +LG +   Q + ++AL Y+N+ +E+     +    K + +   G  +E+V   
Sbjct: 176 DFWEAINNLGLVSYEQGDRNQALNYWNRAIELSKDAAEPVLAKAVLVYQQGQTEEAVRLA 235

Query: 150 DKSTG 154
            ++ G
Sbjct: 236 QQALG 240



 Score = 47.0 bits (110), Expect = 7e-10
 Identities = 32/137 (23%), Positives = 66/137 (48%)

Query: 269 ADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPE 328
           AD+  RL + + A+   +KA +L  + P     LG +      Y+ +    ++ + + P+
Sbjct: 83  ADASLRLNQLDPAIAALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPD 142

Query: 329 DDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYD 388
              +  +LG +    K Y  +I+ F+K++ +  +   A N LG       +  +AL  ++
Sbjct: 143 SSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYWN 202

Query: 389 KAIEIDPLYNEPKISKS 405
           +AIE+     EP ++K+
Sbjct: 203 RAIELSKDAAEPVLAKA 219



 Score = 46.6 bits (109), Expect = 9e-10
 Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 127 KTWFYKGICLKMLGNYDESVEAFDK----STGDYETLFLTWNDLGYCYYQNGEYDKAIGC 182
           + W         L   D ++ A +K    S  +   LF     LG   ++ G Y +A   
Sbjct: 77  RVWLVLADASLRLNQLDPAIAALEKAQKLSPREPAILFA----LGSARFRQGNYSEAASF 132

Query: 183 FDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSK 242
             + L +  +   +L   G     ++QY  A+  F KAV     +++AI N G+  Y+  
Sbjct: 133 LQRGLAIKPDSSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQG 192

Query: 243 KYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSK 294
             + A++ + +A++L+         KA  + + G+ E+AV   ++A+  DS+
Sbjct: 193 DRNQALNYWNRAIELSKDAAEPVLAKAVLVYQQGQTEEAVRLAQQALGKDSQ 244



 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 34/187 (18%)

Query: 41  ETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGE 100
           + ++   +KA +L P     L  LG       N   A  +  R + ++P++  AL  LG 
Sbjct: 93  DPAIAALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQRGLAIKPDSSGALFDLGN 152

Query: 101 IHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDKSTGDYETLF 160
           ++L Q++Y  A+  + K +++     K  F++ I                          
Sbjct: 153 VYLIQKQYPPAIAAFQKAVQV-----KPDFWEAI-------------------------- 181

Query: 161 LTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKA 220
              N+LG   Y+ G+ ++A+  +++A+ L  +    +  K +   ++ Q   AV    +A
Sbjct: 182 ---NNLGLVSYEQGDRNQALNYWNRAIELSKDAAEPVLAKAVLVYQQGQTEEAVRLAQQA 238

Query: 221 VIQDECY 227
           + +D  Y
Sbjct: 239 LGKDSQY 245



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 20/69 (28%), Positives = 36/69 (52%)

Query: 22  ESSSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYF 81
           +SS    ++G    ++K Y  ++  F KA+++ PD   ++  LG  S E  + + A  Y+
Sbjct: 142 DSSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPDFWEAINNLGLVSYEQGDRNQALNYW 201

Query: 82  GRLIELEPE 90
            R IEL  +
Sbjct: 202 NRAIELSKD 210



 Score = 30.8 bits (68), Expect = 5e-05
 Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 16/147 (10%)

Query: 160 FLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDK 219
           F  W  L     +  + D AI   +KA  L       L   G    ++  Y+ A     +
Sbjct: 76  FRVWLVLADASLRLNQLDPAIAALEKAQKLSPREPAILFALGSARFRQGNYSEAASFLQR 135

Query: 220 AVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLG--E 277
            +        A+++ G      K+Y  AI+ F+KA+ +        F++A  +N LG   
Sbjct: 136 GLAIKPDSSGALFDLGNVYLIQKQYPPAIAAFQKAVQVKPD-----FWEA--INNLGLVS 188

Query: 278 YEKA----VLNY-KKAIEL--DSKNPI 297
           YE+      LNY  +AIEL  D+  P+
Sbjct: 189 YEQGDRNQALNYWNRAIELSKDAAEPV 215