Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 923 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 31/157 (19%), Positives = 67/157 (42%)

Query: 130 FYKGICLKMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTL 189
           + + I     G ++ ++   D+  GD           G CYY   + +  I    +A+ L
Sbjct: 11  YQQAIAAYQAGEFEAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGITLLRRAIAL 70

Query: 190 DGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAIS 249
           D       N  G   +++   T A+E   +A+  D  +  A +N+ I+  K    + A+ 
Sbjct: 71  DPTDPTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATALQ 130

Query: 250 CFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYK 286
            +++ L+ +  NP   +  A +   +G+++  +  Y+
Sbjct: 131 DYQQLLEADPDNPEIRYNSAHAALAIGDWDFGLPAYE 167



 Score = 42.4 bits (98), Expect = 6e-08
 Identities = 31/126 (24%), Positives = 58/126 (46%)

Query: 171 YQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDA 230
           YQ GE++ AI   D+ L    +   +L  +GLC    +Q    +    +A+  D      
Sbjct: 18  YQAGEFEAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGITLLRRAIALDPTDPTH 77

Query: 231 IYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIE 290
             N G    +    + A+    +AL ++ ++    F +A +L +LG+   A+ +Y++ +E
Sbjct: 78  FNNLGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATALQDYQQLLE 137

Query: 291 LDSKNP 296
            D  NP
Sbjct: 138 ADPDNP 143



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 266 FYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGL-GLSYNYLNEYNSSIQSYEKAVE 324
           + +A +  + GE+E A+    + +  D  +     GL GL Y   ++  + I    +A+ 
Sbjct: 11  YQQAIAAYQAGEFEAAIAQLDRLLG-DVPDWAAALGLQGLCYYCCDQKETGITLLRRAIA 69

Query: 325 LNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKAL 384
           L+P D   ++NLG L  +  +  E++    ++L ++  +  A      +   L +   AL
Sbjct: 70  LDPTDPTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQKLGDPATAL 129

Query: 385 MCYDKAIEIDPLYNEPKISKSS 406
             Y + +E DP  + P+I  +S
Sbjct: 130 QDYQQLLEADP--DNPEIRYNS 149



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 38/170 (22%), Positives = 67/170 (39%), Gaps = 11/170 (6%)

Query: 20  ITESSSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGK--YSMENRNLDMA 77
           IT ++    +     Y   ++E ++   D+ L   PD   +L   G   Y  + +   + 
Sbjct: 3   ITAAAQHDYQQAIAAYQAGEFEAAIAQLDRLLGDVPDWAAALGLQGLCYYCCDQKETGIT 62

Query: 78  EIYFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLK 137
            +   R I L+P +     +LG +   Q    +AL    + L ID +     F + I L+
Sbjct: 63  LLR--RAIALDPTDPTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAARFNRAITLQ 120

Query: 138 MLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKAL 187
            LG+   +++       DY+ L     D     Y +     AIG +D  L
Sbjct: 121 KLGDPATALQ-------DYQQLLEADPDNPEIRYNSAHAALAIGDWDFGL 163



 Score = 29.3 bits (64), Expect = 5e-04
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 11/124 (8%)

Query: 265 YFYKADSLNRLGEYEKAVLN-YKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAV 323
           ++++  SL        A LN   +AI L           G+ +  L ++  S   Y+ A 
Sbjct: 536 FWHERSSLEYYDNQLTAALNSLNQAIALQGATADHLISRGVLHYRLGQFPESCADYDAAA 595

Query: 324 ELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSN---NKY-----AWNG--LGNS 373
            + PE  +   N G+LQ    N+ +     E   D  S+    +Y     AW G  LG  
Sbjct: 596 AIAPESPLLRCNRGFLQLHWGNWLQGWPDLEVRFDFQSDLDPFQYRQLAPAWQGEPLGQQ 655

Query: 374 YLLL 377
            LL+
Sbjct: 656 TLLI 659



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 20/84 (23%), Positives = 34/84 (40%)

Query: 271 SLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDD 330
           SL + G+Y  A      A EL      FW        Y N+  +++ S  +A+ L     
Sbjct: 509 SLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYDNQLTAALNSLNQAIALQGATA 568

Query: 331 ISWSNLGYLQYKNKNYNESISYFE 354
               + G L Y+   + ES + ++
Sbjct: 569 DHLISRGVLHYRLGQFPESCADYD 592