Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis JJ

 Score =  150 bits (378), Expect = 7e-41
 Identities = 92/294 (31%), Positives = 149/294 (50%), Gaps = 4/294 (1%)

Query: 104 SQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDKSTGDYETLFLTW 163
           +Q  Y  ++  YN  L  +    + W  KG  L  LG Y ES E F+K+          +
Sbjct: 37  NQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFNKALLIDSENSEAF 96

Query: 164 NDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQ 223
           N LG    + G Y KA+  +DK+L +D     + N KG+     ++Y+ A+ECFD+++  
Sbjct: 97  NGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWNNKGITLTNMQRYSEAIECFDRSISI 156

Query: 224 DECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAV- 282
           +    D  YNKG S +K  KY  +I  + KAL ++         K +S  +L  YE A+ 
Sbjct: 157 NAKNSDVWYNKGESQFKLGKYQESIDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIE 216

Query: 283 -LNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQY 341
             N  + I   S+ P ++     +Y     +  +++ Y++ +E+NP +     N G    
Sbjct: 217 CFNTAETINPKSEYPPYYKAD--AYRDTENFEDALKYYDETLEINPSNADVLINKGICFD 274

Query: 342 KNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDP 395
           K KNY+ +IS F+ ++ L+  N   W   GNSY+ LK+YE ++ CY KA+E+DP
Sbjct: 275 KMKNYSSAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYEFSISCYKKALELDP 328



 Score =  145 bits (367), Expect = 1e-39
 Identities = 98/342 (28%), Positives = 169/342 (49%), Gaps = 3/342 (0%)

Query: 1   MIKLVVVTIFIFSMLLPLPI-TESSSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTC 59
           M K+VV    I  +L+   I  + S +Y + G + Y + +Y  S+  ++ AL  +P +  
Sbjct: 1   MRKIVVFLTVILVLLMAGCIGDQKSKSYNDKGLELYNQGNYVDSISEYNLALLENPKSAE 60

Query: 60  SLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLL 119
                G   ++      +   F + + ++ EN  A   LG +      Y KAL  Y+K L
Sbjct: 61  IWVNKGNSLLKLGIYGESTECFNKALLIDSENSEAFNGLGTVLSKTGNYQKALEMYDKSL 120

Query: 120 EIDNSVGKTWFYKGICLKMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKA 179
            ID+   + W  KGI L  +  Y E++E FD+S          W + G   ++ G+Y ++
Sbjct: 121 NIDSENSEAWNNKGITLTNMQRYSEAIECFDRSISINAKNSDVWYNKGESQFKLGKYQES 180

Query: 180 IGCFDKALTLDGNLKYSLNGKGLCCEKKEQYTMAVECFDKA-VIQDECYYDAIYNKGISC 238
           I  ++KAL +D  ++ +L GKG    K + Y  A+ECF+ A  I  +  Y   Y K  + 
Sbjct: 181 IDSYNKALLIDEKMETALLGKGNSYLKLQNYESAIECFNTAETINPKSEYPPYY-KADAY 239

Query: 239 YKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIF 298
             ++ +  A+  +++ L++N SN      K    +++  Y  A+ N+  AI+LD KN   
Sbjct: 240 RDTENFEDALKYYDETLEINPSNADVLINKGICFDKMKNYSSAISNFDLAIQLDPKNVQI 299

Query: 299 WSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQ 340
           W   G SY  L +Y  SI  Y+KA+EL+PE++ +  N+  ++
Sbjct: 300 WILKGNSYVGLKDYEFSISCYKKALELDPENENAKENIDIVE 341



 Score =  117 bits (292), Expect = 7e-31
 Identities = 63/210 (30%), Positives = 113/210 (53%)

Query: 196 SLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKAL 255
           S N KGL    +  Y  ++  ++ A++++    +   NKG S  K   Y  +  CF KAL
Sbjct: 27  SYNDKGLELYNQGNYVDSISEYNLALLENPKSAEIWVNKGNSLLKLGIYGESTECFNKAL 86

Query: 256 DLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSS 315
            +++ N   +      L++ G Y+KA+  Y K++ +DS+N   W+  G++   +  Y+ +
Sbjct: 87  LIDSENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSENSEAWNNKGITLTNMQRYSEA 146

Query: 316 IQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYL 375
           I+ +++++ +N ++   W N G  Q+K   Y ESI  + K+L ++   + A  G GNSYL
Sbjct: 147 IECFDRSISINAKNSDVWYNKGESQFKLGKYQESIDSYNKALLIDEKMETALLGKGNSYL 206

Query: 376 LLKNYEKALMCYDKAIEIDPLYNEPKISKS 405
            L+NYE A+ C++ A  I+P    P   K+
Sbjct: 207 KLQNYESAIECFNTAETINPKSEYPPYYKA 236