Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 393 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis JJ

 Score =  115 bits (288), Expect = 2e-30
 Identities = 101/367 (27%), Positives = 162/367 (44%), Gaps = 39/367 (10%)

Query: 29  EMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELE 88
           E+G + Y    Y+ S++ F+K L  +P N  +  + G                       
Sbjct: 17  EIGTEYYNNGKYQKSIEYFNKTLNSEPKNPDAWYFKGN---------------------- 54

Query: 89  PENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEA 148
                A + LG+  L+Q+ Y+KAL      LEI  S         + L  L  + ESVE 
Sbjct: 55  -----AYQMLGKSKLAQDSYEKALSIRPNDLEIIKSYT-------MLLNSLELFKESVEI 102

Query: 149 FDK-STGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLNGKGLCCEKK 207
               S  D E + +    LG  Y + G++++AI  ++  L      K  L  KG      
Sbjct: 103 LKNVSESDDEIIEI----LGDAYLKTGKFEEAILHYNDILERKPRYKEILAKKGTALVGL 158

Query: 208 EQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFY 267
           +Q+  A+E ++K +       +   N G + Y  KKY  AI  ++  L+ +  +      
Sbjct: 159 KQFDEALEIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLS 218

Query: 268 KADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNP 327
           K D+L +LG+  +A+  Y K +E   +N   W  +GL Y    +Y ++I   E A E NP
Sbjct: 219 KGDALRKLGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNP 278

Query: 328 EDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCY 387
            +      LG    K +NYN+ + + EK+LD +S    AW   G    LL+ + +A+ CY
Sbjct: 279 LNPSILVKLGRTYVKLRNYNKGLEFMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCY 338

Query: 388 DKAIEID 394
            KAI I+
Sbjct: 339 KKAISIN 345



 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 78/320 (24%), Positives = 150/320 (46%), Gaps = 9/320 (2%)

Query: 47  FDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYFGRLIELEPENKCALKSLGEIHLSQE 106
           ++KAL + P++   LE +  Y+M   +L++ +     L  +   +   ++ LG+ +L   
Sbjct: 69  YEKALSIRPND---LEIIKSYTMLLNSLELFKESVEILKNVSESDDEIIEILGDAYLKTG 125

Query: 107 EYDKALYYYNKLLEIDNSVGKTWFYKGICLKMLGNYDESVEAFDK--STGDYETLFLTWN 164
           ++++A+ +YN +LE      +    KG  L  L  +DE++E ++K      Y+T    W 
Sbjct: 126 KFEEAILHYNDILERKPRYKEILAKKGTALVGLKQFDEALEIYEKVLKISPYDTE--VWK 183

Query: 165 DLGYCYYQNGEYDKAIGCFDKALTLD-GNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQ 223
           ++G  +Y   +Y+KAI  +D  L    G+   +L+ KG    K  +   A++ + K + +
Sbjct: 184 NIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLS-KGDALRKLGKTNEALDLYTKVLEK 242

Query: 224 DECYYDAIYNKGISCYKSKKYSCAISCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVL 283
               Y+     G+  Y ++ Y  AI   E A + N  NP        +  +L  Y K + 
Sbjct: 243 HIQNYEPWCRVGLLYYDTEDYETAIYYLELANERNPLNPSILVKLGRTYVKLRNYNKGLE 302

Query: 284 NYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKN 343
             +KA++ DS+    W   G   N L  +  +I  Y+KA+ +N  D   W +L  +    
Sbjct: 303 FMEKALDKDSEYAKAWCYKGYILNLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTI 362

Query: 344 KNYNESISYFEKSLDLNSNN 363
              + S   +E +++L ++N
Sbjct: 363 GKEDYSKEAYENAVNLENHN 382



 Score = 77.4 bits (189), Expect = 7e-19
 Identities = 68/307 (22%), Positives = 127/307 (41%), Gaps = 35/307 (11%)

Query: 20  ITESSSTYAEMGEQCYLEKD-YETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAE 78
           ++ES     E+    YL+   +E ++  ++  LE  P     L   G   +  +  D A 
Sbjct: 106 VSESDDEIIEILGDAYLKTGKFEEAILHYNDILERKPRYKEILAKKGTALVGLKQFDEAL 165

Query: 79  IYFGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYKGICLKM 138
             + +++++ P +    K++G    + ++Y+KA+ +Y+  L            KG  L+ 
Sbjct: 166 EIYEKVLKISPYDTEVWKNIGNAFYTVKKYEKAIQFYDMYLNEHKGDFGVTLSKGDALRK 225

Query: 139 LGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDGNLKYSLN 198
           LG  +E+++ + K    +   +  W  +G  YY   +Y+ AI   + A     N +  LN
Sbjct: 226 LGKTNEALDLYTKVLEKHIQNYEPWCRVGLLYYDTEDYETAIYYLELA-----NERNPLN 280

Query: 199 GKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISCFEKALDLN 258
                                           +   G +  K + Y+  +   EKALD +
Sbjct: 281 P-----------------------------SILVKLGRTYVKLRNYNKGLEFMEKALDKD 311

Query: 259 NSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQS 318
           +     + YK   LN L  + +A+  YKKAI ++  +  FW  L   Y  + + + S ++
Sbjct: 312 SEYAKAWCYKGYILNLLERHYEAIDCYKKAISINKNDSKFWMHLSNVYKTIGKEDYSKEA 371

Query: 319 YEKAVEL 325
           YE AV L
Sbjct: 372 YENAVNL 378



 Score = 47.0 bits (110), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 336 LGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEIDP 395
           +G   Y N  Y +SI YF K+L+    N  AW   GN+Y +L   + A   Y+KA+ I P
Sbjct: 18  IGTEYYNNGKYQKSIEYFNKTLNSEPKNPDAWYFKGNAYQMLGKSKLAQDSYEKALSIRP 77

Query: 396 LYNEPKISKS 405
             N+ +I KS
Sbjct: 78  --NDLEIIKS 85