Pairwise Alignments

Query, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

Subject, 197 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis JJ

 Score = 75.5 bits (184), Expect = 1e-18
 Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 31/219 (14%)

Query: 191 GNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAISC 250
           G  K+  +G  LC    E+Y  A+EC+DK +      + A++ KG+   K K+   A+ C
Sbjct: 6   GIQKWHSHGALLC--NSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKENEKALQC 63

Query: 251 FEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLN 310
           F   L++N+S       K     +L + E    NY K  +L  +N          YN  N
Sbjct: 64  FNSVLNMNSSYIPAIKNKKMVEEKLKKQENE--NYNKFSKLGVEN----------YNQGN 111

Query: 311 EYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNNKYAWNGL 370
            +  ++  +EKA E+NP          Y +   KN  ++    ++ L +       WN  
Sbjct: 112 -FEKALGYFEKAFEINP----------YSETLRKNIEKTRIKLKEILPIR------WNNK 154

Query: 371 GNSYLLLKNYEKALMCYDKAIEIDPLYNEPKISKSSISK 409
           G  Y  +KNY+KA  C++KA+ ++P +     +K+ + K
Sbjct: 155 GVEYYKVKNYQKAFECFEKAVTLNPNFESALKNKAMVQK 193



 Score = 68.6 bits (166), Expect = 2e-16
 Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 29/217 (13%)

Query: 129 WFYKGICLKMLGNYDESVEAFDKSTGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALT 188
           W   G  L     Y E++E +DK    Y   FL     G  + +  E +KA+ CF+  L 
Sbjct: 10  WHSHGALLCNSEKYAEALECYDKILSYYPDDFLAVFGKGMVFLKLKENEKALQCFNSVLN 69

Query: 189 LDGNLKYSLNGKGLCCEKKEQYTMAVECFDKAVIQDECYYDAIYNKGISCYKSKKYSCAI 248
           ++ +   ++  K +  EK ++             Q+   Y+     G+  Y    +  A+
Sbjct: 70  MNSSYIPAIKNKKMVEEKLKK-------------QENENYNKFSKLGVENYNQGNFEKAL 116

Query: 249 SCFEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNY 308
             FEKA ++   NPY     +++L +  E        K  I+L    PI W+  G+ Y  
Sbjct: 117 GYFEKAFEI---NPY-----SETLRKNIE--------KTRIKLKEILPIRWNNKGVEYYK 160

Query: 309 LNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKN 345
           +  Y  + + +EKAV LNP  + +  N   +Q   KN
Sbjct: 161 VKNYQKAFECFEKAVTLNPNFESALKNKAMVQKLIKN 197



 Score = 55.1 bits (131), Expect = 2e-12
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 42/192 (21%)

Query: 34  CYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSME-----------NRNLDMAEIYFG 82
           C  EK Y  +++C+DK L   PD+  ++   G   ++           N  L+M   Y  
Sbjct: 18  CNSEK-YAEALECYDKILSYYPDDFLAVFGKGMVFLKLKENEKALQCFNSVLNMNSSYIP 76

Query: 83  ----------RLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLLEIDNSVGKTWFYK 132
                     +L + E EN      LG  + +Q  ++KAL Y+ K  EI+          
Sbjct: 77  AIKNKKMVEEKLKKQENENYNKFSKLGVENYNQGNFEKALGYFEKAFEINP--------- 127

Query: 133 GICLKMLGNYDESVEAFDKSTGDY--ETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLD 190
                    Y E++    + T     E L + WN+ G  YY+   Y KA  CF+KA+TL+
Sbjct: 128 ---------YSETLRKNIEKTRIKLKEILPIRWNNKGVEYYKVKNYQKAFECFEKAVTLN 178

Query: 191 GNLKYSLNGKGL 202
            N + +L  K +
Sbjct: 179 PNFESALKNKAM 190



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 31  GEQCYLEKDYETSVKCFDKALELDPDNTCSLE 62
           G + Y  K+Y+ + +CF+KA+ L+P+   +L+
Sbjct: 155 GVEYYKVKNYQKAFECFEKAVTLNPNFESALK 186