Pairwise Alignments

Query, 403 a.a., U32 family peptidase from Methanococcus maripaludis S2

Subject, 609 a.a., putative collagenase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  162 bits (409), Expect = 3e-44
 Identities = 107/304 (35%), Positives = 168/304 (55%), Gaps = 27/304 (8%)

Query: 2   VELLAPARDLSGLITAFNNGADSVYCGLKEMSMRATAKNFERNELIEGINFAHDADKRVY 61
           +ELLAPA++L   I A N+GAD+VY G  +   RA A N    ++   +  AH  + R+Y
Sbjct: 7   IELLAPAKNLECGIEAINHGADAVYIGAPKFGARAAAVN-SLEDIEALVKHAHLYNARIY 65

Query: 62  LCTNTVVYEDDILNLNEILEFAKSAEVDAIIVNDIGAMVTAKELG-LEVHVSVQ-NNITN 119
           +  NT++ E+++    E++       VDA+IV D+G  +T   L  + +H S Q +N T 
Sbjct: 66  VTVNTILKEEELKETEEMIHALYRVGVDALIVQDMG--ITKLNLPPIPLHASTQMDNRTP 123

Query: 120 SKTAEFFSKFAKRVVLSRELTLNQIKRIKENLKVNKVDLELEGFIHGALCTAMSGRCYLS 179
            K    +    ++VVL+REL++ +I++I E       ++ LE F+HGALC + SG+CY+S
Sbjct: 124 EKVKFLWEAGFRQVVLARELSIREIRKIHEICP----EVPLEVFVHGALCVSYSGQCYVS 179

Query: 180 SYLFNRNANCGDCLQPCRRSWKLVNEHADGTHELISEGKYLLSPKDLCMIEHIPEMIDV- 238
              F R+AN G+C Q CR  + LV    D   ++I + K+LLS KD+   + +  ++D  
Sbjct: 180 QACFGRSANRGECAQFCRLPFSLV----DSEGKVIVKDKHLLSLKDMNQSDELERLLDAG 235

Query: 239 FDCFKIEGRAKNVDYVMRATKTYREAIDSVV----------DGTYEEKLPIFKKELDKIY 288
              FKIEGR K+V YV   T  YR+ +D++            GT       FK +LDK +
Sbjct: 236 ASSFKIEGRLKDVSYVKNVTAAYRQKLDAIFARRPEYVRASSGTCRFD---FKPQLDKSF 292

Query: 289 NREY 292
           +R +
Sbjct: 293 SRGF 296