Pairwise Alignments

Query, 321 a.a., bile acid:sodium symporter family protein from Methanococcus maripaludis S2

Subject, 335 a.a., membrane protein from Herbaspirillum seropedicae SmR1

 Score = 55.5 bits (132), Expect = 2e-12
 Identities = 66/289 (22%), Positives = 129/289 (44%), Gaps = 16/289 (5%)

Query: 49  SLFLGIIMFGMGMTLNKDDFKTVLERPIDVVFGSILQFSLMPL--LAFLVITIFHLPTEL 106
           +  +G++ F  G  L+++            V   +  F+L PL  LAF  +    +  EL
Sbjct: 40  TFMIGLLFFMHGAKLSREAVVAGFTHWKLHVTVLLCTFALFPLVGLAFKPLLTPFITPEL 99

Query: 107 ALGFILLGSCPGGTASNV-ITYLAKGDVALSVAITTFSTLLAPMITPILV--LWFAGAWI 163
            LG + L   P    S++  T +A+G+V  ++   + S LL   +TP+LV  L  A    
Sbjct: 100 YLGLLFLCVLPSTVQSSIAFTSVARGNVPAAICAASASNLLGIFLTPLLVGALVVAHEGA 159

Query: 164 DVSAYSMFLSIVKIVLIPVILGVIINNSLGKKIDSIRQVLPLLSVVAIVLIV------GA 217
             S+    L IV  +L+P + G I    +G+ I+  +  L  +   +I+L+V        
Sbjct: 160 GHSSLDSILKIVYQLLLPFVAGQIARPWIGRWIERNKSWLKFVDQSSILLVVYVAFSEAV 219

Query: 218 IIGVNSEKIVSSGVIVLLAVIIHNALGLLLGYIGTKLIGMDEKKSRAVTIEVGVQNSGLA 277
           + G+  +  +S  V +L+   +  AL + L   G++ +G  ++    +      ++    
Sbjct: 220 VQGLWHQVPMSMLVALLVINAVLLALIMALTTYGSRRLGFSKEDEITIVFCGSKKSLASG 279

Query: 278 VALATIHFSP----LAAVPGAIFSVWHNITGPIL-ANYWSKKDKKESFV 321
           V +A + FS     +  +P  +F     +   +L A Y +++++ E+ V
Sbjct: 280 VPMAKVLFSSGAIGMVLLPVMLFHQLQLMVCAVLAARYGARQEEVEAAV 328