Pairwise Alignments

Query, 410 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 523 a.a., COG1361 S-layer family protein from Methanococcus maripaludis JJ

 Score =  239 bits (611), Expect = 1e-67
 Identities = 137/378 (36%), Positives = 219/378 (57%), Gaps = 27/378 (7%)

Query: 2   RLLAKSGLLLLVFALISSSYALSVDDPQYVVDNSEFGETNPNVIHPGDDVNIWIKVVNDN 61
           +++   GLL ++   +S   AL +D+PQY          NPNVIHPGDDV++WI V ND 
Sbjct: 6   KIILAIGLLSILVTAVS---ALEIDEPQY----------NPNVIHPGDDVDVWIDVANDE 52

Query: 62  -YDKQLKDVKVEISPHYPFEIKQVNPETGVAEISHLNEGESDTAYFKIHVSENAPSDEYR 120
             D+ ++D+++ +  +YPFE+KQVNP  GV EIS LNEGESDTAYFK+H++++A S +YR
Sbjct: 53  GSDEIIEDLRISVESNYPFEVKQVNPTKGVYEISQLNEGESDTAYFKLHINDDASSRDYR 112

Query: 121 IDVTVT--ATEYESGDEPNEREKTLTKIYYVPIYGIAKFEINLDDNNPINPSESEELEVY 178
           +DVTV+    EY+ GD+     K+ TKIYY+P+YG+A FEIN  D   + P+++E +++ 
Sbjct: 113 LDVTVSYDIVEYD-GDDRQVISKSYTKIYYIPVYGLANFEIN-SDGVTLTPAKTENVQIK 170

Query: 179 IKNQGTGTAKYLTLNLAGTSDLNIVGPTTFYLESLSPQTQKLIKVDAYAIPTTEDGIYSI 238
           + N+GTGTAK  TL +     +N +  T FYL SLSP   KL+ ++ +A     +G Y I
Sbjct: 171 VTNKGTGTAKEATLTIGSNDLINPIDTTKFYLGSLSPDITKLLSLNLHASGDATEGSYLI 230

Query: 239 NANIEWIGEDGAEYTSSIPINLKVKSTIFDNQPFLYLD--GVKAISGGQEVTIALANRGT 296
            A + WI  DG E +  I I   V+  I      +  D   +KA     ++ + L N G 
Sbjct: 231 PATLSWIDSDGTENSEVINIGFIVEGDINLGISNVITDPTEIKAQETYVKIDVDLTNNGH 290

Query: 297 SKLKHCVLEIDGAVELNDNY----IRYIGDLEEDDSDSGIYELEVFGDSKT---NITATL 349
            + K+  +++       D++     + IG L   D+ +  + ++V  D++    ++   +
Sbjct: 291 GEAKNIEIDLLSEYPFKDSWSNSNFKNIGTLTSGDTKTATFYIDVDKDAEAKHYSVPLNI 350

Query: 350 TYFNEYHEEFTLVQEFEL 367
           TY + + EE + ++  +L
Sbjct: 351 TYMDIFDEEHSEMEYIDL 368