Pairwise Alignments

Query, 410 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 419 a.a., COG1361 S-layer family protein from Methanococcus maripaludis JJ

 Score = 59.3 bits (142), Expect = 2e-13
 Identities = 103/436 (23%), Positives = 178/436 (40%), Gaps = 51/436 (11%)

Query: 3   LLAKSGLLLLVFALISSSYA-LSVDDPQYVVDNSEFGETNPNVIHPGDDVNIWIKVVNDN 61
           +++   LL+L+   ++  YA  S+ D   V  N    +  P V   GD   + I V N+ 
Sbjct: 7   IISSITLLMLLSVAMAPVYAETSISDISLVSINLVNQDPTPAV--GGDIFEVRIGVKNEG 64

Query: 62  YDKQLKDVKVEISPHYPFEI---KQVNPETGVAEISHLNEGESDTAYFKIHVSENAPSDE 118
             K   D  +E+ P YPF+    ++++ E G  +    ++ E     FK+ V+E   S  
Sbjct: 65  -GKSAGDYILELDPSYPFQKVAGEELSKEIGFLDKYQDDDKEIIITAFKLRVNEEVTSGN 123

Query: 119 YRIDVTVTATEYESGDEPNEREKT-LTKIYYVPIYGIAKFEINLDDNNPINPSESEELEV 177
           Y + V +    Y+ GD      KT LT    V +      E+ L  +  +NP E+ +L  
Sbjct: 124 YPLKVLL----YKKGDLTKTGYKTELT----VDVGNKENAEVMLSTSE-LNPGENSKLTF 174

Query: 178 YIKNQGTGTAKYLTLNLAGTSD--LNIVGPTTFYLESLSPQTQKLIKVDAYAIPTTEDGI 235
            IKN G+   K LT +     +  L +    T +++ +       +  D  A    E G+
Sbjct: 175 TIKNAGSAPLKDLTFSWDTPENKILPLGSGNTRFVKYIGVNQAVNLDYDVMAGSDIEPGL 234

Query: 236 YSINANIEWIGEDGAEYTSSIPINLKVKSTIFDNQPFLYLDGVKAISGGQEV----TIAL 291
           Y IN  + +  ED         IN   K+ I D    +       I+  + +    T ++
Sbjct: 235 YKINMYLNY--ED--------TINSSEKNIIQDAGIHILEKADFEIAFSENLDDSYTFSI 284

Query: 292 ANRGTSKLKHCVLEI---DGAVELNDNYIRYIGDLEEDDSDSGIYELEVFGDSKTNITAT 348
            N G S  K   + I   DG   +  N    IG+L+  D     + L     +++ I   
Sbjct: 285 MNVGNSDTKSVSMYIPKQDGWTIIGSNN-AIIGNLDAGDYTYASFNLLADSSNQSEIPIK 343

Query: 349 LTYFNEYHEEFTLVQEFELDPANSQV-----------KQEGTNYTFIGLIVVLAVV---A 394
           +  +   +E    V E E+  +NS             K   T Y  +  IV++A++    
Sbjct: 344 VEAYYTSNEGNRKVVEKEILVSNSNAALTYINQADSGKGGFTGYLIMAGIVIIAILILGI 403

Query: 395 YILYRRWKKRKDSEEE 410
           +I+ +  KK K +++E
Sbjct: 404 FIIRKILKKIKSAKKE 419