Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 414 a.a., ABC-type antimicrobial peptide transport system, permease component from Pseudomonas fluorescens FW300-N2E2

 Score = 65.1 bits (157), Expect = 4e-15
 Identities = 74/281 (26%), Positives = 127/281 (45%), Gaps = 52/281 (18%)

Query: 135 ELEKGRWMKDSDKYTCVIGYSLAHDTFDREIDIGDKIEI------------NDKKYKVVG 182
           EL  GR    +D +  V+G  +A     +   +GDK+ +            +DK + VVG
Sbjct: 125 ELADGRAFA-TDPFEVVLGAEVAEALHYK---LGDKLVLAHGVAAISLVKHDDKPFTVVG 180

Query: 183 ILEQIGNPDDDNSIV---------------IPYEAASEVFDVDDEYNM---------FMV 218
           IL++ G P D    +               +P +    +   D   NM         FM+
Sbjct: 181 ILKRTGTPVDRTLHISLGGMEAIHIDWKNGVPAQGNGRI-SADQARNMDLTPQAITAFML 239

Query: 219 KIKDGEDVTKVSE-DIEDELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISL 277
            + +     K+S   ++ E+ + RG+   ++L    L E + S+       L  ++   +
Sbjct: 240 GLNN-----KISTFALQREINEFRGEPLLAILPGVALQE-LWSLMGTAEKALFVISLFVV 293

Query: 278 LVGAVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVG-TILGI 336
           L G +G+   +  S+ ERR+++ IL+++GA    I ++ V+EA  L L G I G  +L I
Sbjct: 294 LTGLIGMLTAILTSLNERRREMAILRSVGARPWHIATLLVLEAFALALAGVIAGLALLYI 353

Query: 337 LIAKAIEYVAAISGYGLIRAWIS---WELIVGVLVFSFVVG 374
            IA A  YV +  G  L  +W S   W L+ G+LV + ++G
Sbjct: 354 GIAAAQGYVQSAYGLYLPLSWPSEYEWTLLAGILVAALLMG 394