Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 425 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 98/425 (23%), Positives = 183/425 (43%), Gaps = 47/425 (11%)

Query: 12  RNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITV---YPSQQ 68
           + +  +K +  LTI+ +    L I  L+++G G+++ I   I     ++I V   Y +Q 
Sbjct: 9   QEMAAEKLRLSLTILAVAWSTLCIAGLLAVGEGIRSGIVRTIQNGNGNLIHVSGGYATQT 68

Query: 69  ITSI--AMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATKSSTYQI 126
                   + +  ++D + +  +  V   L        +T+ D+  +   +A KS  YQ 
Sbjct: 69  HGRFHEGQALSLTEQDSQVLAALPMVKHALPSAEWQELITFADKRSWMMPYAVKSE-YQA 127

Query: 127 FFTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREID------------IGDK 170
                    L  GRW    D    +   V+GY LA   F+++              +G  
Sbjct: 128 MNKLRL---LPGGRWFNPVDETQQRKVVVLGYQLAVQLFNQQEGDWFSGGELEQDPVGQI 184

Query: 171 IEINDKKYKVVGIL-EQIGNPDD----DNSIVIPYEAASEVFDVDDEYNMFMVKIKDGED 225
            +I   ++ V+G+L +  GN +     D S   P+      F  +   +   ++ + G D
Sbjct: 185 AKIGAHEFTVIGVLAKNSGNIEQGSPIDYSGFTPFSTWQR-FHPNQAISGINLEPRVGSD 243

Query: 226 VTKVSEDIEDELED----SRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAG-ISLLVG 280
              ++  ++  L+     S  D+   ++    L++     F +     +G+ G I+L V 
Sbjct: 244 RQALAATVQQVLKRKYAASLQDQQIVMVQDHFLSQKSMQQFLLRLQSFLGIIGFITLAVA 303

Query: 281 AVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAK 340
           ++GI+N M  ++    +DIG+  A+GA  NTI   ++ ++      GGI G  LG+  A 
Sbjct: 304 SLGITNVMFATVKRATRDIGVRMAVGATPNTIRCHYLAQSLITMGMGGIAG--LGVTFA- 360

Query: 341 AIEYVAAI--------SGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVD 392
            +  +AAI           G     +S  +IV V+V   V+GI++ + PA   AK+ P+ 
Sbjct: 361 MVRLLAAIPLQGNPIYDHLGQPVPELSLSVIVIVIVTITVMGIVAAWLPANHAAKVTPLQ 420

Query: 393 TLRGE 397
            L+ E
Sbjct: 421 ALQSE 425