Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 407 a.a., probable ABC transporter permease protein from Synechococcus elongatus PCC 7942

 Score =  150 bits (379), Expect = 6e-41
 Identities = 112/408 (27%), Positives = 190/408 (46%), Gaps = 30/408 (7%)

Query: 7   VSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPS 66
           +S A + +   + +S LT++GI+IG  ++++++ +G G Q   +E+    G +V+ + P 
Sbjct: 9   LSMAVKTLRANRLRSALTMLGIIIGNASVITMVGVGQGAQRLASEQFESLGPNVLFIVPG 68

Query: 67  QQIT---SIAMSKNFNDRDLKAVE-DVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATKSS 122
            Q T    + + K     D  A+   V     V         VTY  +   + VF    S
Sbjct: 69  NQDTRRGGLDIPKTLVLADAVAIATQVPTAGEVAPQVSTRQLVTYQGESSTTQVFGVTPS 128

Query: 123 TYQIFFTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREIDIGDKIEINDKKY 178
                F     + + +GR+  D D    +   V+G  LA   F  +  +G  I I    +
Sbjct: 129 -----FLTVRSFSVARGRFFSDLDLSRAEQVAVLGSDLAIKLFGVQNPVGASIRIKGASF 183

Query: 179 KVVGILEQ----IGNPDDDNSIVIPYEAASEVFDVDDEYNM----FMVKIKDGEDVTKVS 230
           +V+G++E     +GN  DD   +     +S +      Y +      V  KD   +    
Sbjct: 184 RVIGVMEPKGSFLGNNQDDAVYLPLTTVSSRILGTTSPYGIEVSFISVAAKDANSIDAAQ 243

Query: 231 EDIEDELEDSRG---DENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNT 287
             I + L        +++F V + + +   + ++ + LT+ L  +AGISLLVG +GI N 
Sbjct: 244 FQITNLLRQRHRIIREDDFEVRSQKDVLTIVGTVTNGLTLMLSAIAGISLLVGGIGIMNI 303

Query: 288 MHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAA 347
           M +S+ ER ++IG+ KA+GA    IL+ F++EA  L L GG +GT LGI    AI  +  
Sbjct: 304 MLVSVSERTQEIGLRKAIGATQKDILNQFMIEAVILALLGGAIGTGLGITGVTAIALLTP 363

Query: 348 ISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLR 395
                 ++A +S   I   +  S  +G+  G  PAR  A+L+P+  LR
Sbjct: 364 ------LKAGVSPVAIAITVTISSGIGLFFGVVPARQAARLDPIVALR 405