Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 647 a.a., transmembrane ATP-binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  141 bits (355), Expect = 6e-38
 Identities = 100/405 (24%), Positives = 190/405 (46%), Gaps = 24/405 (5%)

Query: 5   DVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVY 64
           + V  A R +     +++LT++GIVIG+ ++V+++++G G QN + + IS  G+ ++ V 
Sbjct: 255 EAVKMALRALRANLFRTILTLLGIVIGVGSVVAMLAIGTGAQNSVLDRISSMGSDLLVVR 314

Query: 65  PSQ-QITSIAMSKNFN--DRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATKS 121
           PS       A   N      D  A+ ++  V   +        +   + +Y ++   T  
Sbjct: 315 PSMANFRGSAGGTNVTLVPADADAITELANVAFAVPEMTSTVTLRRGNIDYQTTANGTVP 374

Query: 122 STYQIFFTEAYGYELEKGRWMKDSDKYT----CVIGYSLAHDTFDREID-IGDKIEINDK 176
                 FTEA  +++ +G ++  +D  T     V+G ++    F    D IG  + +N  
Sbjct: 375 Q-----FTEAKSWKIGRGEFINRNDMETYAPVAVLGETVVKTLFPEGSDPIGQYVLVNKI 429

Query: 177 KYKVVGILEQIG----NPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSED 232
            ++V+G++  +G      D D+ +++P    S             VK++D   +    E 
Sbjct: 430 PFQVIGVMSGMGASAGGNDQDDVVLVPLTTGSMRLFGQRNIRTITVKVQDASAIDLTQER 489

Query: 233 IEDELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSI 292
           I+  L +    ++  +     + E+ +   + +  FL  VA ISLLVG +G+ N M +S+
Sbjct: 490 IQALLNERHRKDDTQITNMSSVREAFTETSNTMKFFLGSVAAISLLVGGIGVMNIMLVSV 549

Query: 293 LERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGYG 352
            ER ++IG+  A GA    IL  F+VEA  +   GG +G + G+    A +       +G
Sbjct: 550 SERTREIGVRMATGARERDILVQFIVEALVVSAIGGAIGVVAGLSTGYAAK------AFG 603

Query: 353 LIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           +  ++    + +     +F+ G+L GY PAR+ ++L P   L  +
Sbjct: 604 MPVSFTPGPVAL-AFACAFLTGLLFGYLPARNASRLQPAVALSAD 647