Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 650 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  134 bits (337), Expect = 8e-36
 Identities = 109/404 (26%), Positives = 188/404 (46%), Gaps = 23/404 (5%)

Query: 5   DVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVY 64
           + +  AGR++     ++ LT++G+VIG+ A+V+++++G G +  +   I   G +++ V 
Sbjct: 259 EALKMAGRSLRANIFRTALTLLGVVIGVAAVVTMMAIGEGSKQDVLTRIQSMGTNLLLVR 318

Query: 65  PSQQ-ITSIAMSKNFNDRDLKAVEDVRGVDVVL-YGWFGGTQVTYHDQEYYSSVFATKSS 122
           P    I       +    D +AV  + G+  V       G  V     +Y +++  T  +
Sbjct: 319 PGAPGIRPSGTDVSLTPTDAEAVAQLAGMAAVAPERMASGITVRREGIDYRTTINGTWPA 378

Query: 123 TYQIFFTEAYGYELEKGRWMKDSDKYT----CVIGYSLAHDTFDREID-IGDKIEINDKK 177
                +  A  + +  G +   +D        V+G ++A + F  E D +G    + +  
Sbjct: 379 -----YAAAKDWPMAWGSFFDATDLQASAPVAVLGQTVAKNLFPGEEDPVGSYFLVRNVP 433

Query: 178 YKVVGILEQIG----NPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSEDI 233
           + V+G+LE  G      D D+ ++IP   A          +    +++D   + +    I
Sbjct: 434 FLVIGVLEAKGATPFGQDQDDIVLIPLTTAFARVSGGRYLSSLTARVEDATTIDESQAAI 493

Query: 234 EDELEDSRGDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSIL 293
           E  L+   G  +F V   + L E +    + LT+ L  VA ISLLVG +G+ N M +S+ 
Sbjct: 494 ESLLQARHGKVDFQVRNTQSLLEMVEKTQNSLTLLLGAVALISLLVGGIGVMNIMLVSVT 553

Query: 294 ERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGYGL 353
           ER ++IGI  A GA  + IL  F  EA  +   GG+ G  LG+  A       A++ +GL
Sbjct: 554 ERTREIGIRLATGARASDILLQFNTEAVAVCGVGGLAGVGLGLGAA------LAVAEFGL 607

Query: 354 IRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
              +     IV     +F+ G+L GY PAR  A+L+PV  L  E
Sbjct: 608 PVRFTPGPPIV-AFCCAFLTGLLFGYLPARKAARLDPVVALSAE 650