Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 403 a.a., ABC-type antimicrobial peptide transport system, permease component from Dechlorosoma suillum PS

 Score =  179 bits (454), Expect = 1e-49
 Identities = 123/416 (29%), Positives = 214/416 (51%), Gaps = 39/416 (9%)

Query: 5   DVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVY 64
           + +  A R I +   +S LT++GIVIG+ A++++++LG G    + E+IS  G++++ + 
Sbjct: 4   NAILLALREIRRNLMRSFLTVLGIVIGVAAVITMVTLGNGATRMVAEQISSLGSNLLILR 63

Query: 65  PSQQI---TSIAMSKNFNDRDLKA----VEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVF 117
           P Q++      A + NF   D++A    V  ++ V  V+      T       E +SS  
Sbjct: 64  PGQRLGPGRDSAGAPNFRAADVEALLTQVPSLKAVAPVV----SSTVTLVAGAENWSSSV 119

Query: 118 ATKSSTYQIFFTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREIDIGDKIEI 173
              ++ Y +    A  ++L  GR   D +    K  CVIG ++    F  +  +G+ + +
Sbjct: 120 TGSTNAYFV----AGNWKLAAGRQFSDEEMRAGKAVCVIGNTVKQKLFAGQSPLGNAVRV 175

Query: 174 NDKKYKVVGILEQIGNP----DDDNSIVIPYEAASE-VFDVDDEYNMFMVKIKDGEDVTK 228
            +   ++VGIL   G      D D+ +++P   A   +     + +  M+ +KDG    +
Sbjct: 176 KNFSCEIVGILASKGQGAMGMDQDDVVLMPLVTAQRRLTGKTQDVSTLMLSLKDGASSPR 235

Query: 229 VSEDIEDELEDSR-----GDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVG 283
           V E I   + + R      D+NF+++  +Q+AE++S     +T  L  VA +SLLVG +G
Sbjct: 236 VMEQIRQLMRERRKLAENDDDNFNLMDTKQIAEALSGTIGTMTTLLGAVAAVSLLVGGIG 295

Query: 284 ISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIE 343
           I N M +S+ ER ++IGI  A+GA  N +L  F++EA  L  FGG+VG IL +L    + 
Sbjct: 296 IMNIMLVSVTERTREIGIRLAIGALENEVLLQFLIEAVALSAFGGLVGIILALLACLGL- 354

Query: 344 YVAAISGYGLIRAWISWELIVGVLVFSF--VVGILSGYFPARSGAKLNPVDTLRGE 397
             +A+ G   +     +   + +L F F   +G++ GY PAR  A L+P++ LR E
Sbjct: 355 --SALMGMPFL-----FNPGINLLAFGFSAAIGVIFGYVPARRAAGLDPIEALRHE 403