Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 399 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 97/415 (23%), Positives = 183/415 (44%), Gaps = 59/415 (14%)

Query: 13  NITQKKTQSLLTIIGIVIGI-------LAIVSLISLGYGVQNYITEEISKAGASVITVYP 65
           ++ + K+  LL ++ I++ +         IV  +SL       +  E+        ++Y 
Sbjct: 10  SLLRSKSGPLLLLLQIMLSVAIVANASFIIVERLSLMARESGIVENEVFD-----FSIYH 64

Query: 66  SQQITSIAMSKNFNDRDLKAVEDVRGV-DVV------LYGWFGGTQVTYHDQEYYSSVFA 118
             + T +      + RDL+ +  + GV DV       L G    +  T   +E   S   
Sbjct: 65  FDKSTDLVAQ---DKRDLELLRAIPGVIDVAPSSMAPLSGGGWSSNFTLGPEERAKSTPN 121

Query: 119 TKSSTYQIFFTEAYGYELEKGR----------WMKDSDKYTCVIGYSLAHDTFDREIDIG 168
           T        F ++ G +L +GR           ++D  K   ++  +     +  +  +G
Sbjct: 122 TGMYMSDEHFIDSLGLKLVEGRNFYPQEITTELLEDGGKM--IVTKAFVDKVWPNDSALG 179

Query: 169 DKIEINDKKYKVVGILEQIGNPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTK 228
             + +  + Y V+G++E++     DNS V      S  +  D  Y  ++V+ K   D+ +
Sbjct: 180 KSVYMGSQHYVVIGVVERLQTAWVDNSNVEYSSVLSVNYPAD--YKRYLVRAK-ASDIAR 236

Query: 229 VSEDIEDELED---SRGDENFSVLTAEQLA-----ESISSIFSVLTIFLVGVAGISLLVG 280
           + E I + L     SR  E F+ ++  ++      E ++++ +++ + L       LL+ 
Sbjct: 237 LKEVIPEVLHKEYPSRVIEGFTTISERRIEAYRDHELMATVLTMMVVLL-------LLIT 289

Query: 281 AVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAK 340
           ++G++  +  +I  R K IG  +ALGA+   I+S F+VE   L L GG +G +L I + +
Sbjct: 290 SLGVTGMVMFNIQRRTKQIGTRRALGAKKRDIISYFLVENYLLCLLGGTLGVLLAIQLGQ 349

Query: 341 AIEYVAAISGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLR 395
            +     +S Y L    +S+ L    +V  FVV  L+ Y PAR  AK++P    R
Sbjct: 350 QL-----MSLYSLPMLALSYPLF--TVVGLFVVTTLAVYLPARKAAKISPATATR 397