Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 410 a.a., lipoprotein releasing system transmembrane protein LolE (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 86/412 (20%), Positives = 172/412 (41%), Gaps = 63/412 (15%)

Query: 21  SLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPSQQIT--SIAMSKNF 78
           +L  + GI +G+ A++ + S+  G++  + + I  A    +TVY    ++  +IA  K  
Sbjct: 27  TLFAVSGIFLGVAALIVVSSVMNGLEGQLKQRILGA-VPQLTVYTKAPLSDWTIAAEK-- 83

Query: 79  NDRDLKAVEDVRGVD--------VVLYGWFGGTQVTYHDQEYYSSVFATKSSTYQIFFTE 130
               L  +  V+GV         V         QV     E    + A    TY   F+E
Sbjct: 84  ----LTMLPGVQGVTPSVSTQAMVQSAANIRAVQVFGVFPELAEKLSAVAQHTYSGAFSE 139

Query: 131 AYGYELEKGRWMKDSDKYTCVIGYSLAHDTFDREIDIGDKIEI---------------ND 175
                         S +Y  ++G  LA      ++  GD + +               + 
Sbjct: 140 L------------TSGQYQVILGSELARQL---KVSPGDTVRLLSGDGVVYSPLGPVPSQ 184

Query: 176 KKYKVVGILEQIGNPDDDNSIVIPYEAASEVF-DVDDEYNMFMVKIKDGEDVTKVSEDIE 234
           +K+ V  + E +G+  D     + Y+ A  +     DE N   + + D      +++D++
Sbjct: 185 RKFLVSAVFE-MGSQVDAGVAYVHYQDAKRLMRQPSDEINQLRLYLNDPFTAPALAKDVQ 243

Query: 235 DELEDSRGDENFSVLTAEQLAESISSIFSVLTI---FLVGVAGISLLVGAVGISNTMHMS 291
             L  ++G E     T     ++   +FS + +    +  +  + + V A  I + + M 
Sbjct: 244 QILT-AQGIE----ATTSDWRDTYGHLFSAVKMEKNMMSLMLSLIVAVAAFNIVSALVMM 298

Query: 292 ILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGY 351
           ++++  D+ +LK  G   + ++ IFVV+     + G  +G ++GILI   +  + A  G 
Sbjct: 299 VVDKTTDVAVLKTQGLRTSAVMGIFVVQGLLNAVLGLALGLVVGILITLNLNGLMATLGI 358

Query: 352 GLIRA--WISWELIVG----VLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
            ++ A   +  +L +G    ++V + VV +++  +PA   A++ P   LR E
Sbjct: 359 SILGAGQMLPVKLALGQLSLIIVGTLVVTLVATLYPALRAARVQPATALRYE 410