Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 656 a.a., ABC transporter, ATP-binding/permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  134 bits (337), Expect = 8e-36
 Identities = 102/396 (25%), Positives = 189/396 (47%), Gaps = 28/396 (7%)

Query: 18  KTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPSQQITS--IAMS 75
           + ++ LT++GI+IGI ++VS+++LG G Q  I + IS  G + I + P         A  
Sbjct: 273 RLRTFLTMLGIIIGIASVVSVVALGEGSQREILKSISSMGTNTIDIRPGLGFGDRRSARV 332

Query: 76  KNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFATKSSTYQIFFTEAYGYE 135
           +     D  A++++  VD V         V   ++   +SV       +++      GYE
Sbjct: 333 RTLTASDANALKNLPYVDSVTPSISSSVTVRLGNKAVTASVNGVGPEFFRV-----RGYE 387

Query: 136 LEKGRWMKDSDKYTCVIGYSLAHDTFDREID----------IGDKIEINDKKYKVVGILE 185
           L +G++  D D    +   ++  D   +++           IG  I + D   +++G+ +
Sbjct: 388 LAQGQFW-DDDSVDALAQDAVIDDNTRKQLFPDSTGAMGSVIGQVIFLGDLPVRIIGVTK 446

Query: 186 Q----IGNPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSEDIEDELEDSR 241
                 GN D  N + +PY   S         +   V++ +        + I   L+   
Sbjct: 447 PKESAFGNSDALN-VWVPYTTVSGRMVGKKYLDGITVRLDESVPSNAAEQGIITLLKMRH 505

Query: 242 GDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIGI 301
           G ++F  +  + + ++I    + +T+ +  +A ISL+VG +G+ N M +S+ ER ++IG+
Sbjct: 506 GTQDFFTINTDTIRQNIEKTTATMTLLISAIAVISLVVGGIGVMNIMLVSVTERTREIGV 565

Query: 302 LKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAISGYGLIRAWISWE 361
             A+GA  + IL  F++EA  + L GG +G  L  LI   + +  A   + +I +  S  
Sbjct: 566 RMAVGARQSDILRQFLIEAVLVCLCGGALGVALAYLI--GVVFAQAGGSFQMIYSTTS-- 621

Query: 362 LIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
            IV     S ++G+L G+ PAR+ A+L+PV+ L  E
Sbjct: 622 -IVAAFACSTLIGVLFGFLPARNAARLDPVEALARE 656