Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 413 a.a., putative ABC transporter, ATP-binding protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  121 bits (303), Expect = 4e-32
 Identities = 103/409 (25%), Positives = 191/409 (46%), Gaps = 35/409 (8%)

Query: 14  ITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPSQQITSIA 73
           IT+ KT+SLLT  G+  GI  +V+LI  G G+Q+ + +     G +  + + + Q T  A
Sbjct: 15  ITRNKTRSLLTAFGVFWGIFMLVALIGGGQGLQDMMQKNFE--GFATNSGFLAAQKTGEA 72

Query: 74  MSKNFNDR--DLKAVE------DVRGVDVV---LYGWFGGTQVTYHDQEYYSSVFATKSS 122
                  R  DL+A++       V+ V+V+   +  W  G+   Y D+EY  SV      
Sbjct: 73  YKGFRKGRWWDLEAIDIERLRSQVKDVEVITPSVARW--GSNAIYGDKEYDCSVKGLYPD 130

Query: 123 TYQIFFTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREID-IGDKIEINDKK 177
              I        E+  GR++ D D    +  CVIG  +    F    D  G  + ++   
Sbjct: 131 YLHI-----ESQEMAYGRFINDVDIREARKVCVIGKRVYESLFKPGEDPCGKYVRVDGIY 185

Query: 178 YKVVGILEQIGNPD----DDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVSEDI 233
           Y+V+G+    G+ +       ++ +P+    + +++  + ++    +K G  V+ V   +
Sbjct: 186 YQVIGMSSSEGDMNIQGRASEAVTLPFTTMQQTYNLGGQIDVICFTVKRGVKVSDVQPQM 245

Query: 234 EDELEDSR-----GDENFSVLTAEQLAESISSIFSVLTIFLVGVAGISLLVGAVGISNTM 288
           E+ ++ +        +    L AE +   + ++F+ + I +  V   +LL GA+G+SN M
Sbjct: 246 EEIIKAAHYIAPNDKQALMYLNAEAMFSMVDNLFTGIHILIWMVGLGTLLAGAIGVSNIM 305

Query: 289 HMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGILIAKAIEYVAAI 348
            +++ ER  +IGI +A+GA    IL   + E+  L    G+ G    +++ + +E + A 
Sbjct: 306 MVTVKERTTEIGIRRAIGARPKDILQQILSESMVLTTIAGMFGISFAVMVLQLVE-MGAN 364

Query: 349 SGYGLIRAWISWELIVGVLVFSFVVGILSGYFPARSGAKLNPVDTLRGE 397
           S  G     +S+ L VG       +G+L+G  PA     + P++ +R E
Sbjct: 365 SNGGDAHFQVSFGLAVGTCALLIALGMLAGLAPAYRAMAIKPIEAIRDE 413