Pairwise Alignments

Query, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

Subject, 419 a.a., ABC transporter, putative permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 97/426 (22%), Positives = 182/426 (42%), Gaps = 60/426 (14%)

Query: 14  ITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITVYPSQQITSI- 72
           I + K ++ LT   +  GI  ++ L+  G G+ +   +  S+   + I ++P     S  
Sbjct: 12  IKRNKLRTFLTGFAVAWGIFMLIVLLGAGNGLIHAFEQSASERAMNSIKIFPGWTSKSYD 71

Query: 73  ----------------AMSKNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSV 116
                             +KNF D  +KA   V         + GG  +++   EY   V
Sbjct: 72  GLKEGRRIRLDNKDLNTTNKNFPDHVIKAGATV---------YQGGVNLSF-GPEY---V 118

Query: 117 FATKSSTYQIFFTEAYGYELEKGRWMKDSD----KYTCVIGYSLAHDTFDREID--IGDK 170
               S  Y    TE    +L KGR++ + D    +   V+    A   FD+     IG  
Sbjct: 119 NLNLSGVYPNH-TEVEVVKLFKGRFINEIDIKERRKVIVLHKKTAEILFDKTHTDPIGQF 177

Query: 171 IEINDKKYKVVGILEQIGNPDDDNSIVIPYEAASEVFDVDDEYNMFMVKIKDGEDVTKVS 230
           +   +  Y+VVG+    G+  D ++  +P+     +++  D+ N  ++  K+ E +   +
Sbjct: 178 VNAGNVVYQVVGLYNDKGDSGDSDAY-LPFTTLQTIYNKGDKLNNLIMTTKNLETIES-N 235

Query: 231 EDIEDELEDSRG-DENFSVLT----------AEQLAESISSIFSVLTIFLVGVAGISLLV 279
           E+ E       G ++ F                 L +   S    + I+++G+   +LL 
Sbjct: 236 EEFEAHYRKVIGANQRFDPTDHSAIWIWNRFTNYLQQQQGSAMLRIAIWVIGI--FTLLS 293

Query: 280 GAVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLGLFGGIVGTILGI--- 336
           G VG+SN M +++ ER ++ GI KALGA+  +IL + +VE+  +    G +G + GI   
Sbjct: 294 GIVGVSNIMLITVKERTREFGIRKALGAKPLSILWLIIVESVTITTIFGYIGMVAGIGAT 353

Query: 337 -LIAKAIEYVAAISGYGLIRAWISWELIVGVLVFS----FVVGILSGYFPARSGAKLNPV 391
             +  A       +G      +++  + +G+ + +     + G L+G FPAR    + P+
Sbjct: 354 EWMNNAFGNQTMDNGIWSETVFLNPTVDIGIAIQATLTLVIAGTLAGLFPARKAVSIRPI 413

Query: 392 DTLRGE 397
           + LR +
Sbjct: 414 EALRAD 419