Pairwise Alignments

Query, 388 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 392 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  107 bits (267), Expect = 6e-28
 Identities = 62/201 (30%), Positives = 109/201 (54%), Gaps = 7/201 (3%)

Query: 39  LSLDRADLYRNIDTLKQKGFIKMGNNPELIG--YSIKLSEKGMDTFENPKFTREEIEKAY 96
           L +D  D+Y  +  L  +  I +      +G  Y  +L+  G+ + ENPKFT++++EKA 
Sbjct: 33  LGVDNDDIYIALKDLCYENKIDLKAQRTTMGVYYFTELTANGIKSVENPKFTKKQVEKAK 92

Query: 97  KTFKIYAEEVTNASYDTYTKSLAAFLNYCKNNEVLEFVIFKFNLIERDFEKWYDNFLN-- 154
           K     +  V N+ Y T+  ++   L+  +N+ VL  ++ K  +I+ DF+ WY    +  
Sbjct: 93  KIINENSALVMNSKYQTHQNNIKILLDEFENDPVLRHIMLKLKIIDYDFDSWYSETTSTM 152

Query: 155 SKMHA---HTLPLDEDEKISIIYKFLNEINSGKIKISEFVKSAYKISGKTEKTINKFNQS 211
           S M A   + LP ++D+++S++YKFL  I+ GK+K   F   A       +   + FN+ 
Sbjct: 153 SSMVASARYELPSNKDKRLSLLYKFLKAISEGKLKAYNFSLMALSGDKNLDTLTDVFNEQ 212

Query: 212 IFLHFVKGIDIRLKKLMSKIE 232
           IF+HF  GI  +L+ ++ +IE
Sbjct: 213 IFVHFYNGILSKLEIILEEIE 233