Pairwise Alignments
Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2
Subject, 536 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2
Score = 153 bits (387), Expect = 1e-41
Identities = 137/538 (25%), Positives = 259/538 (48%), Gaps = 65/538 (12%)
Query: 3 LLEVKNVSKSYGDTE----VLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPT 58
L+EV++++ + E V++ VSF++ G+ + ++G SG+GKSV H + +
Sbjct: 6 LIEVRDLAVEFIVGERRQRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRL------ 59
Query: 59 SGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQR 118
+ Y +A+ P +Y +++ I + +IA++ Q
Sbjct: 60 ---LPYPLAHHP---------------TGTIQYAGQNLLGLKEKTIRHIRGNRIAMIFQE 101
Query: 119 TF-ALYGEKTVAENIMEALTA-AGYEGKDATEWALNLIKMVKLEH---RVAHISRDLSGG 173
+L ++ + I E L G GK AT L L+++V + R+ + +LSGG
Sbjct: 102 PMTSLNPLHSIEKQINEVLGIHKGLSGKVATRRTLELLELVGIPEPHKRLKALPHELSGG 161
Query: 174 EKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVI 233
++QRV++A +A P + +ADEPT LD + L + + +++++ SH ++
Sbjct: 162 QRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLV 221
Query: 234 EELCQKAIWLDKGEM-------RLVGESKH-VVEEFMKTVTSMKEFEKVEVKDELLKLEN 285
+ + + +G + L +H E + S V V LL++E+
Sbjct: 222 RRIAHRVCVMQRGCIVEQASCEELFRAPQHPYTRELLGAEPSGTPASNV-VGPPLLQVED 280
Query: 286 VEKRYVSVDRGI-------VKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPS 338
+ K + + +G+ +KAVDGI S+ + + G+VG SG+GK+TL I +I
Sbjct: 281 L-KVWFPIKKGLFKRTVDYIKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIGSQ 339
Query: 339 KG-NYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEY--SLYPHRTILYNLTESIGLEM 395
G +E + D + +V PL +R + ++FQ+ SL P + + E + +
Sbjct: 340 GGIRFEGKQLDS-LTQQQVRPL-----RREMQVVFQDPFGSLSPRMCVSQIVGEGLRIHK 393
Query: 396 PGEFAKMKAE--HTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLD 453
G A+ + L VG E ++P E S G++ R+A+A+ L+ +P LILLD
Sbjct: 394 IGTEAEQEQAIIAALKEVGLDPETRN----RYPHEFSGGQRQRIAIARALVLKPALILLD 449
Query: 454 EPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTG 511
EPT +D + QV E ++ +++ + TY+ +SHD+ V + + +V+ G++++ G
Sbjct: 450 EPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKHGQVVEQG 507
Score = 93.6 bits (231), Expect = 2e-23
Identities = 67/261 (25%), Positives = 130/261 (49%), Gaps = 11/261 (4%)
Query: 277 KDELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIP 336
+D L+++ ++ ++ +R + V+G+ I E LVG SG+GK+ + I ++P
Sbjct: 3 QDNLIEVRDLAVEFIVGERR-QRVVEGVSFDIKRGETLALVGESGSGKSVTAHSILRLLP 61
Query: 337 PSKGNYE---FRLADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTESI 391
++ + A + + K + R R I M+FQE SL P +I + E +
Sbjct: 62 YPLAHHPTGTIQYAGQNLLGLKEKTIRHIRGNR-IAMIFQEPMTSLNPLHSIEKQINEVL 120
Query: 392 GLE--MPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHL 449
G+ + G+ A + L VG E L+ P ELS G++ RV +A L EP L
Sbjct: 121 GIHKGLSGKVATRRTLELLELVGIPEPHKR--LKALPHELSGGQRQRVMIAMALANEPEL 178
Query: 450 ILLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIK 509
++ DEPT +D + ++ E +++ ++ L + +++SHD++ V + R +++ G I++
Sbjct: 179 LIADEPTTALDVTVQLKILELLKQLQARLGMSLLLISHDLNLVRRIAHRVCVMQRGCIVE 238
Query: 510 TGKPDEIVKILSEEEKDEMIG 530
+E+ + E++G
Sbjct: 239 QASCEELFRAPQHPYTRELLG 259
Score = 60.1 bits (144), Expect = 2e-13
Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 34/244 (13%)
Query: 17 EVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQIIYHVAYCPHCENVE 76
+ + + F L +G +G++G SG+GKS L + + G
Sbjct: 300 KAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIG---------------------- 337
Query: 77 APSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTF-ALYGEKTVAENIMEA 135
SQ G + E K +D ++ L++++ ++ Q F +L V++ + E
Sbjct: 338 --SQGGIRFE------GKQLDSLTQQQVR-PLRREMQVVFQDPFGSLSPRMCVSQIVGEG 388
Query: 136 LTAAGYEGKDATEWAL-NLIKMVKLEHRVAH-ISRDLSGGEKQRVVLARQIAKNPVIFLA 193
L + E A+ +K V L+ + + SGG++QR+ +AR + P + L
Sbjct: 389 LRIHKIGTEAEQEQAIIAALKEVGLDPETRNRYPHEFSGGQRQRIAIARALVLKPALILL 448
Query: 194 DEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAIWLDKGEMRLVGE 253
DEPT LD + V L K+N+ + SH V++ L + + + G++ G+
Sbjct: 449 DEPTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKHGQVVEQGD 508
Query: 254 SKHV 257
++ +
Sbjct: 509 ARSI 512