Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 530 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N2E2

 Score =  163 bits (412), Expect = 2e-44
 Identities = 133/541 (24%), Positives = 258/541 (47%), Gaps = 67/541 (12%)

Query: 3   LLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGM--EGYEPTSG 60
           L+E++++S ++ D  V++N+  ++  G+ + ++G SG+GKSV  H +  +  E    TSG
Sbjct: 11  LIEIRDLSVAFNDQTVVRNLCLDIRPGECLALVGESGSGKSVTAHSILQLLPENEAHTSG 70

Query: 61  QIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTF 120
            I Y        E V A +Q  ++                          +IA++ Q   
Sbjct: 71  SIRYRGQ-----ELVGADTQALRELR----------------------GNRIAMIFQEPM 103

Query: 121 ALYG-----EKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHIS---RDLSG 172
                    EK + E +M      G  GK A +  L L+ +V +++ V  +      LSG
Sbjct: 104 TSLNPLHSVEKQIGETLM---LHKGLGGKAARQRILELLTLVGIQNPVERLKAYPHQLSG 160

Query: 173 GEKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEV 232
           G++QRV++A  +A  P + +ADEPT  LD    + +   L     +  +++++ SH   +
Sbjct: 161 GQRQRVIIAMALACEPELLIADEPTTALDVTVQRKILLLLKSLQQRLGMSLLLISHDLNL 220

Query: 233 IEELCQKAIWLDKGEM-------RLVGESKHVVEEFMKTVTSMKEFEKVEVKDELLKLEN 285
           +  + Q+   +  GE+        L    KH     +       E    + ++E+L++++
Sbjct: 221 VRSIAQRVCVMKAGEIVEQAPCETLFSAPKHPYSCELLHAEPEGEALPRDDREEVLQVQD 280

Query: 286 VEKRY-----VSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKG 340
           +   +     +   +  ++AVDGI +SI   +  G+VG SG+GK+TL + I  +I  S+G
Sbjct: 281 LRVSFPLSGGLFRRKEYLRAVDGISLSIQRGKTLGIVGESGSGKSTLGQAILRLI-ESEG 339

Query: 341 NYEFR-LADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTESIGLEMPG 397
           +  F+  A + +    + P      ++ + ++FQ+   SL P  ++   ++E + +  P 
Sbjct: 340 SIRFQGQALDHLSQKALRPW-----RKQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQPS 394

Query: 398 --EFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEP 455
             E  + +    L  VG           ++P E S G++ R+A+A+ L+ +P LILLDEP
Sbjct: 395 SPEQCEARVIQALKEVGLDPATR----HRYPHEFSGGQRQRIAIARALVLKPALILLDEP 450

Query: 456 TGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDE 515
           T  +D   + QV   +++ + + D TY+ +SHD+  V  +     +++ GK+++ G   +
Sbjct: 451 TSALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQGASHD 510

Query: 516 I 516
           +
Sbjct: 511 V 511



 Score = 62.0 bits (149), Expect = 5e-14
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 34/241 (14%)

Query: 22  VSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQIIYHVAYCPHCENVEAPSQV 81
           +S  +  G  +G++G SG+GKS L              GQ I  +        +E+   +
Sbjct: 304 ISLSIQRGKTLGIVGESGSGKSTL--------------GQAILRL--------IESEGSI 341

Query: 82  GKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTF-ALYGEKTVAENIMEALTAAG 140
             + +       K++  W         +K++ ++ Q  F +L    +V + I E L    
Sbjct: 342 RFQGQALDHLSQKALRPW---------RKQMQVVFQDPFGSLSPRMSVQQIISEGLEVHQ 392

Query: 141 YEGKDATEW-ALNLIKMVKLEHRVAH-ISRDLSGGEKQRVVLARQIAKNPVIFLADEPTG 198
               +  E   +  +K V L+    H    + SGG++QR+ +AR +   P + L DEPT 
Sbjct: 393 PSSPEQCEARVIQALKEVGLDPATRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTS 452

Query: 199 TLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAIWLDKGEMRLVGESKHVV 258
            LD    K V   L +   K+++  +  SH   V+  L    I +  G++   G S  V 
Sbjct: 453 ALDRTVQKQVVALLRQLQQKYDLTYLFISHDLAVVRALAHDMIVIKDGKVVEQGASHDVF 512

Query: 259 E 259
           +
Sbjct: 513 D 513