Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 553 a.a., ABC-type uncharacterized transport system, duplicated ATPase component from Pseudomonas stutzeri RCH2

 Score =  163 bits (413), Expect = 1e-44
 Identities = 138/545 (25%), Positives = 264/545 (48%), Gaps = 69/545 (12%)

Query: 3   LLEVKNVSKSYGDTE----VLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGY--- 55
           L+EV++++  +   E    V++ V+F++ +G+ + ++G SG+GKSV  H +  +  Y   
Sbjct: 10  LVEVRDLAVEFVTGEQVQRVVEGVTFDIRKGETLALVGESGSGKSVTAHSILRLLPYPLA 69

Query: 56  EPTSGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIM 115
               GQI++H       + ++A  +  +K                          +IA++
Sbjct: 70  RHPQGQILFHGQ-----DLLKADEKAMRKIR----------------------GNRIAMV 102

Query: 116 LQRTF-ALYGEKTVAENIMEALTA-AGYEGKDATEWALNLIKMVKLEH---RVAHISRDL 170
            Q    +L    TV + I E L    G  GK AT   L L+++V +     R+     +L
Sbjct: 103 FQEPMTSLNPLHTVGKQINEVLEIHKGLRGKAATARTLELLELVGIPEPRKRIRAYPHEL 162

Query: 171 SGGEKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWP 230
           SGG++QRVV+A  +A  P + +ADEPT  LD      +   L E   +  +A+++ SH  
Sbjct: 163 SGGQRQRVVIAMALANEPELLIADEPTTALDVTVQLKILELLKELQARLGMALLLISHDL 222

Query: 231 EVIEELCQKAIWLDKGEM-------RLVGESKHVVEEFMKTVTSMKEFEKVEVKDELLKL 283
            ++  +  +   + +G +        L    +H   + +           VE    LL++
Sbjct: 223 NLVRRIAHRVCVMQRGRVVEQALCEDLFRAPQHPYTQELLAAEPSGGPVAVEEAPPLLEV 282

Query: 284 ENVEKRYVSVDRGI-------VKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIP 336
           +++ + +  + +G+       +KAVDG++ S+ + +  G+VG SG+GK+TL   I  ++ 
Sbjct: 283 DDL-RVWFPIKKGLLRRTVDHIKAVDGVNFSLPKGQTLGIVGESGSGKSTLGLAILRLLG 341

Query: 337 PSKGNYEFRLAD-EWVDMTKVGPLYRGRAKRYIGMLFQEY--SLYPHRTILYNLTESIGL 393
            S+G   F+    + +   +V PL     +R + ++FQ+   SL P  ++   + E + +
Sbjct: 342 -SRGEIRFQGQHLQSMSQRQVRPL-----RRQMQVVFQDPFGSLSPRMSVGQIVGEGLHI 395

Query: 394 EMPGEFAKMKAE--HTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLIL 451
              G   + +      LV VG   E       ++P E S G++ R+A+A+ L+ +P LIL
Sbjct: 396 HRMGNAKEQEQAIIEALVEVGLDPETRH----RYPHEFSGGQRQRIAIARALVLKPALIL 451

Query: 452 LDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTG 511
           LDEPT  +D   + QV E ++  +++ + TY+ +SHD+  V  +  +  +V+ G++++ G
Sbjct: 452 LDEPTSALDRTVQRQVVELLRSLQAKYNLTYLFISHDLAVVRALSHQMMVVKQGQVVEQG 511

Query: 512 KPDEI 516
              +I
Sbjct: 512 AAADI 516



 Score = 91.3 bits (225), Expect = 9e-23
 Identities = 62/261 (23%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 276 VKDELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVI 335
           + + L+++ ++   +V+ ++ + + V+G+   I + E   LVG SG+GK+  +  I  ++
Sbjct: 6   IAENLVEVRDLAVEFVTGEQ-VQRVVEGVTFDIRKGETLALVGESGSGKSVTAHSILRLL 64

Query: 336 P-PSKGNYEFRLADEWVDMTKVGP--LYRGRAKRYIGMLFQE--YSLYPHRTILYNLTES 390
           P P   + + ++     D+ K     + + R  R I M+FQE   SL P  T+   + E 
Sbjct: 65  PYPLARHPQGQILFHGQDLLKADEKAMRKIRGNR-IAMVFQEPMTSLNPLHTVGKQINEV 123

Query: 391 IGLE--MPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPH 448
           + +   + G+ A  +    L  VG  E      +  +P ELS G++ RV +A  L  EP 
Sbjct: 124 LEIHKGLRGKAATARTLELLELVGIPEPRKR--IRAYPHELSGGQRQRVVIAMALANEPE 181

Query: 449 LILLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKII 508
           L++ DEPT  +D   + ++ E +++ ++ L    +++SHD++ V  +  R  +++ G+++
Sbjct: 182 LLIADEPTTALDVTVQLKILELLKELQARLGMALLLISHDLNLVRRIAHRVCVMQRGRVV 241

Query: 509 KTGKPDEIVKILSEEEKDEMI 529
           +    +++ +        E++
Sbjct: 242 EQALCEDLFRAPQHPYTQELL 262