Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 539 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  152 bits (383), Expect = 4e-41
 Identities = 135/540 (25%), Positives = 253/540 (46%), Gaps = 57/540 (10%)

Query: 3   LLEVKNVSKSY----GDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPT 58
           LL+V+N+S S+    G  + +KNVSF++  G+ + ++G SG+GKSV  + L  +    P 
Sbjct: 6   LLQVRNLSVSFTTNDGVVDAVKNVSFDIRPGETLAIVGESGSGKSVSTNALMQLL---PK 62

Query: 59  SGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQR 118
           + +I       P    +    ++  K + +   +          E   +L   + + +Q 
Sbjct: 63  NARIH------PESSIMFEGEELLNKTDTQMRRIRGDRIGMIFQEPMTSLNPYMRVGVQV 116

Query: 119 TFALYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKL---EHRVAHISRDLSGGEK 175
             A+   + V++N              A +  L L ++V L   +        + SGG+ 
Sbjct: 117 AEAIRCHRNVSQN-------------QAKQRVLELFQLVHLPDPKGAYQKFPHEFSGGQL 163

Query: 176 QRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEE 235
           QR+++A  +   P I +ADEPT  LD      V   + E      +A++  +H   V++ 
Sbjct: 164 QRIMIAMALINEPDILIADEPTTALDVTVQAEVLRLIKEIQANMGMAILFITHDLGVVKF 223

Query: 236 LCQKAIWLDKGEMRLVGESKHVV-----EEFMKTVTSMKEFEKVEVKDE---LLKLENVE 287
           +  + + + KG++   G ++ +      +     + S+ +  K  V  +   LLK E++ 
Sbjct: 224 VADRVLVMCKGDVVEQGSTEQLFLQPEHDYTRMLINSIPKGSKDPVAVDAAPLLKAEDIR 283

Query: 288 KRY------VSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGN 341
            ++      +S      +AV GI + + + E  G+VG SG+GK+TL + +  ++P S G 
Sbjct: 284 VKFLVKPYFISRRNQYFEAVKGISLELKQGETLGIVGESGSGKSTLGRALIGLLP-STGQ 342

Query: 342 YEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEY--SLYPHRTILYNLTESIGLEMP--G 397
             F+      D   +    R   K+ I M+FQ+   SL P  T+   +TE + +  P   
Sbjct: 343 IAFK----GQDFRALSEKQRLALKKDIQMVFQDPYGSLSPRMTVGEIITEGLLVHQPHIS 398

Query: 398 EFAKM-KAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPT 456
           +  +M +A   L  V        N + ++P E S G++ R+A+A+ LI EP  ILLDEPT
Sbjct: 399 KLERMQRARRALEEVRLDP----NSINRYPHEFSGGQRQRIAIARALILEPSFILLDEPT 454

Query: 457 GTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEI 516
             +D   +  V E +++ +   +  Y+ +SHD+  V  + DR  +++ G++++ G  + I
Sbjct: 455 SALDRSVQLTVIELLKEIQKRRNIGYLFISHDLAVVKALSDRVLVMQKGQVMEQGSAESI 514