Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 536 a.a., ABC transporter from Pseudomonas syringae pv. syringae B728a

 Score =  162 bits (411), Expect = 2e-44
 Identities = 139/542 (25%), Positives = 263/542 (48%), Gaps = 63/542 (11%)

Query: 3   LLEVKNVSKSY--GDTE--VLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPT 58
           L+E+++++  +  GD+   V++N+SF++  G+ + ++G SG+GKSV  H +  +  Y   
Sbjct: 6   LIEIRDLAVEFVTGDSRQRVVENISFDIRRGETLALVGESGSGKSVTAHSILRLLPYPIA 65

Query: 59  SGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQR 118
           S     H +   H                   Y  + +      ++      +IA++ Q 
Sbjct: 66  S-----HPSGTIH-------------------YAGEDLLKVEEKKLRTIRGNRIAMIFQE 101

Query: 119 TF-ALYGEKTVAENIMEALTA-AGYEGKDATEWALNLIKMVKLEH---RVAHISRDLSGG 173
              +L    +V + I E L    G  GK ATE  L L+ +V +     R+  +  +LSGG
Sbjct: 102 PMTSLNPLHSVEKQINEVLGLHKGLTGKAATERTLELLDLVGIPEPHKRLKALPHELSGG 161

Query: 174 EKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVI 233
           ++QRV++A  +A  P + +ADEPT  LD      +   L +   +  +A+++ SH   V+
Sbjct: 162 QRQRVMIAMALANEPELLIADEPTTALDVTVQLKILELLKQLQARLGMALLLISHDLNVV 221

Query: 234 EELCQKAIWLDKGEM-------RLVGESKHVVEEFMKTVTSMKEFEKVEVKDELLKLENV 286
            ++  +   + +G +        L    +H   + + +               LL++E++
Sbjct: 222 RQIANRVCVMQRGCIVEQASCEELFRSPQHPYTKVLLSAEPSGGPSTNPAGAPLLEIEDL 281

Query: 287 EKRYVSVDRGI-------VKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSK 339
            K +  + +G+       VKAVDGI  S+ + +  G+VG SG+GK+TL   I  +I  S+
Sbjct: 282 -KVWFPIKKGLLKRTVDHVKAVDGIRFSLPQGQTLGIVGESGSGKSTLGLAILRLIG-SQ 339

Query: 340 GNYEFR-LADEWVDMTKVGPLYRGRAKRYIGMLFQEY--SLYPHRTILYNLTESIGLEMP 396
           G   F+  A E +   ++ PL     +R + ++FQ+   SL P  ++   + E + +   
Sbjct: 340 GTIRFKGNALESLSQQQIRPL-----RRQMQVVFQDPFGSLSPRMSVAEIVGEGLRIHGM 394

Query: 397 GEFAKMKAE--HTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDE 454
           G  A+ +      L  VG   +       ++P E S G++ R+A+A+ L+ +P LILLDE
Sbjct: 395 GTPAEQQTAIIEALREVGLDPDTRH----RYPHEFSGGQRQRIAIARALVLKPALILLDE 450

Query: 455 PTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPD 514
           PT  +D   + QV E ++  +++ + TY+ +SHD+  V  +  +  +V+ G++++ G   
Sbjct: 451 PTSALDRTVQRQVVELLRSLQTKYNLTYLFISHDLAVVKALSHQLMVVKQGQVVEQGAAQ 510

Query: 515 EI 516
           +I
Sbjct: 511 DI 512



 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 68/248 (27%), Positives = 123/248 (49%), Gaps = 11/248 (4%)

Query: 278 DELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIP- 336
           D L+++ ++   +V+ D    + V+ I   I   E   LVG SG+GK+  +  I  ++P 
Sbjct: 4   DNLIEIRDLAVEFVTGDSR-QRVVENISFDIRRGETLALVGESGSGKSVTAHSILRLLPY 62

Query: 337 --PSKGNYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTESIG 392
              S  +     A E +   +   L   R  R I M+FQE   SL P  ++   + E +G
Sbjct: 63  PIASHPSGTIHYAGEDLLKVEEKKLRTIRGNR-IAMIFQEPMTSLNPLHSVEKQINEVLG 121

Query: 393 LE--MPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLI 450
           L   + G+ A  +    L  VG  E      L+  P ELS G++ RV +A  L  EP L+
Sbjct: 122 LHKGLTGKAATERTLELLDLVGIPEPHKR--LKALPHELSGGQRQRVMIAMALANEPELL 179

Query: 451 LLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKT 510
           + DEPT  +D   + ++ E +++ ++ L    +++SHD++ V  + +R  +++ G I++ 
Sbjct: 180 IADEPTTALDVTVQLKILELLKQLQARLGMALLLISHDLNVVRQIANRVCVMQRGCIVEQ 239

Query: 511 GKPDEIVK 518
              +E+ +
Sbjct: 240 ASCEELFR 247