Pairwise Alignments
Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2
Subject, 533 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021
Score = 156 bits (395), Expect = 2e-42
Identities = 137/543 (25%), Positives = 248/543 (45%), Gaps = 63/543 (11%)
Query: 14 GDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQIIYHVAYCPHCE 73
G E +K + ++ G+ + V+G SG+GKS + G+ G +G + Y
Sbjct: 23 GTVEAVKGIDLDVRSGETLAVVGESGSGKS---QTMMGIMGLLAKNGTVTGSARY----- 74
Query: 74 NVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFALYGEKTVAENIM 133
VG K+++ ++IT ++ + + LY T+ I
Sbjct: 75 --RGQELVG--------LAPKALNKVRGSKITMIFQEPMTSL----DPLY---TIGRQIA 117
Query: 134 EALTA-AGYEGKDATEWALNLIKMVKLEH---RVAHISRDLSGGEKQRVVLARQIAKNPV 189
E + G K+A L L+++V + R+ +LSGG++QRV++A +A P
Sbjct: 118 EPIVHHRGGSFKEARRRVLELLELVGIPEPGRRIDSYPHELSGGQRQRVMIAMALANEPD 177
Query: 190 IFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAIWLDKGEMR 249
I +ADEPT LD + + L + +A+V+ +H +++ + + +GE+
Sbjct: 178 ILIADEPTTALDVTIQAQILDLLKSLQRRFGMAIVLITHDLGIVKYFADRVAVMRRGEVV 237
Query: 250 LVGESKHVVEEFMKTVTSM-----KEFEKVEVKDELLKLENVEKRYVSVDRGI------- 297
G + + E T M K D + +E R V+VD I
Sbjct: 238 EQGMTADIFERPKGDYTRMLLEAEPSGRKASPPDNAPII--LEGRNVAVDYTIPGGLFRG 295
Query: 298 ----VKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNYEFRLAD-EWVD 352
+AVDG+++ + + + G+VG SG+GK+TL + + ++P S G Y F D D
Sbjct: 296 ASAAFRAVDGVNLRLRQGQTIGIVGESGSGKSTLGRALLRLLP-SSGYYRFGSTDISGFD 354
Query: 353 MTKVGPLYRGRAKRYIGMLFQEY--SLYPHRTILYNLTESIGLEMPG---EFAKMKAEHT 407
+ PL +R + ++FQ+ SL P RT+ +TE + + P +A
Sbjct: 355 RGAMRPL-----RRQLQLVFQDPYGSLSPRRTVGEIITEGLHVHEPDLSRADRDRRAIAA 409
Query: 408 LVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGTMDPITRNQV 467
L VG ++P E S G++ R+A+A+ +I +P +++LDEPT +D + QV
Sbjct: 410 LKEVGLDPASRN----RYPHEFSGGQRQRIAIARAIILKPKVVILDEPTSALDRSVQGQV 465
Query: 468 AESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIVKILSEEEKDE 527
E ++ + + +Y+ +SHD+ V + D +++ G+I++ G+ D I E
Sbjct: 466 IELLRDLQEKHGLSYIFISHDLSVVKAMSDYVIVMKNGRIVEEGETDAIFDAPREPYTKT 525
Query: 528 MIG 530
+IG
Sbjct: 526 LIG 528
Score = 96.7 bits (239), Expect = 2e-24
Identities = 73/249 (29%), Positives = 125/249 (50%), Gaps = 13/249 (5%)
Query: 275 EVKDELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAV 334
E+KD +L + ++ + + D G V+AV GID+ + E +VG SG+GK+ I +
Sbjct: 3 EMKDSILAVRGLKVDFYTPD-GTVEAVKGIDLDVRSGETLAVVGESGSGKSQTMMGIMGL 61
Query: 335 IPPS---KGNYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTE 389
+ + G+ +R E V + L + R + I M+FQE SL P TI + E
Sbjct: 62 LAKNGTVTGSARYR-GQELVGLAPKA-LNKVRGSK-ITMIFQEPMTSLDPLYTIGRQIAE 118
Query: 390 SIGLEMPGEF--AKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREP 447
I G F A+ + L VG E ++ +P ELS G++ RV +A L EP
Sbjct: 119 PIVHHRGGSFKEARRRVLELLELVGI--PEPGRRIDSYPHELSGGQRQRVMIAMALANEP 176
Query: 448 HLILLDEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKI 507
+++ DEPT +D + Q+ + ++ + V+++HD+ V DR A++R G++
Sbjct: 177 DILIADEPTTALDVTIQAQILDLLKSLQRRFGMAIVLITHDLGIVKYFADRVAVMRRGEV 236
Query: 508 IKTGKPDEI 516
++ G +I
Sbjct: 237 VEQGMTADI 245
Score = 59.7 bits (143), Expect = 3e-13
Identities = 65/277 (23%), Positives = 111/277 (40%), Gaps = 54/277 (19%)
Query: 2 LLLEVKNVSKSY-----------GDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLR 50
++LE +NV+ Y + V+ L +G +G++G SG+GKS L R
Sbjct: 275 IILEGRNVAVDYTIPGGLFRGASAAFRAVDGVNLRLRQGQTIGIVGESGSGKSTL---GR 331
Query: 51 GMEGYEPTSGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWN-NNEITYALK 109
+ P+SG Y S D + L+
Sbjct: 332 ALLRLLPSSGY-----------------------------YRFGSTDISGFDRGAMRPLR 362
Query: 110 KKIAIMLQRTF-ALYGEKTVAENIMEALTA--AGYEGKDATEWALNLIKMVKLE----HR 162
+++ ++ Q + +L +TV E I E L D A+ +K V L+ +R
Sbjct: 363 RQLQLVFQDPYGSLSPRRTVGEIITEGLHVHEPDLSRADRDRRAIAALKEVGLDPASRNR 422
Query: 163 VAHISRDLSGGEKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIA 222
H + SGG++QR+ +AR I P + + DEPT LD V L + KH ++
Sbjct: 423 YPH---EFSGGQRQRIAIARAIILKPKVVILDEPTSALDRSVQGQVIELLRDLQEKHGLS 479
Query: 223 MVITSHWPEVIEELCQKAIWLDKGEMRLVGESKHVVE 259
+ SH V++ + I + G + GE+ + +
Sbjct: 480 YIFISHDLSVVKAMSDYVIVMKNGRIVEEGETDAIFD 516