Pairwise Alignments
Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2
Subject, 548 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021
Score = 165 bits (418), Expect = 4e-45
Identities = 133/539 (24%), Positives = 252/539 (46%), Gaps = 65/539 (12%)
Query: 3 LLEVKNVSKSY----GDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEP- 57
LLEV+N+S + G +K++S+ L++G+ + +LG SG+GKSV + + P
Sbjct: 5 LLEVRNLSVEFHTAAGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDMPPG 64
Query: 58 --TSGQIIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIM 115
+SG+I+ + + P++ ++ +++A++
Sbjct: 65 RISSGEILLDGR-----DLLTMPAEERREVN----------------------GRRVAMI 97
Query: 116 LQRTFA-LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKL---EHRVAHISRDLS 171
Q + L +V I EA+T G G A E AL L++ V + E + + S
Sbjct: 98 FQDPLSHLNPVYSVGWQISEAMTTHGLAGSKAREEALRLLRRVGIPEPERAMRKYPHEFS 157
Query: 172 GGEKQRVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPE 231
GG++QRV++A +A P + +ADEPT LD V L E + +A++I +H
Sbjct: 158 GGQRQRVMIAMALALRPDLLIADEPTTALDVTVQAEVLKLLKELQRETGMAVLIITHDLG 217
Query: 232 VIEELCQKAIWLDKGEMRLVGESKHVVEEFMKTVTSM---------KEFEKVEVKDELLK 282
V+ E+ + + ++KG + G + + + T E + LL
Sbjct: 218 VVSEIADRVVVMEKGAIVEAGTVREIYKNPQHPYTQKLIAAAPGKGAMHEPGARAEPLLS 277
Query: 283 LENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNY 342
+ +V K Y G +A+ GI + E +VG SG+GK+TL++ + + P G
Sbjct: 278 VRDVRKTY-----GSFEALKGISFDLMPGETMAVVGESGSGKSTLARALLRLDEPDSGTA 332
Query: 343 EFRLADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTESIGLE---MPG 397
++ D + + P + +R + M+FQ+ SL P T+ ++E+ + +P
Sbjct: 333 LWKGRD----LFALSPAELYKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIHPDILPK 388
Query: 398 EFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTG 457
+ + LV VG + E + ++P + S G++ R+A+A+ L EP LI+ DE
Sbjct: 389 AKWRERVAELLVQVGLSAEH----MSRYPHQFSGGQRQRIAIARALALEPQLIICDEAVS 444
Query: 458 TMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEI 516
+D + QV E + + R E+ ++ ++HD+ V + D +++ G++++ G E+
Sbjct: 445 ALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVREV 503
Score = 94.0 bits (232), Expect = 1e-23
Identities = 68/246 (27%), Positives = 123/246 (50%), Gaps = 8/246 (3%)
Query: 278 DELLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVI-- 335
+ LL++ N+ + + G+V AV I +++ E ++G SG+GK+ S I +I
Sbjct: 3 EHLLEVRNLSVEFHTA-AGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDM 61
Query: 336 PPSKGNYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQE--YSLYPHRTILYNLTESIGL 393
PP + + L D +T R R + M+FQ+ L P ++ + ++E++
Sbjct: 62 PPGRISSGEILLDGRDLLTMPAEERREVNGRRVAMIFQDPLSHLNPVYSVGWQISEAMTT 121
Query: 394 E-MPGEFAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILL 452
+ G A+ +A L VG E E + K+P E S G++ RV +A L P L++
Sbjct: 122 HGLAGSKAREEALRLLRRVGIPEPE--RAMRKYPHEFSGGQRQRVMIAMALALRPDLLIA 179
Query: 453 DEPTGTMDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGK 512
DEPT +D + +V + +++ + E +I++HD+ V + DR ++ G I++ G
Sbjct: 180 DEPTTALDVTVQAEVLKLLKELQRETGMAVLIITHDLGVVSEIADRVVVMEKGAIVEAGT 239
Query: 513 PDEIVK 518
EI K
Sbjct: 240 VREIYK 245
Score = 75.9 bits (185), Expect = 4e-18
Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 38/263 (14%)
Query: 3 LLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQI 62
LL V++V K+YG E LK +SF+L G+ M V+G SG+GKS L L ++ EP SG
Sbjct: 275 LLSVRDVRKTYGSFEALKGISFDLMPGETMAVVGESGSGKSTLARALLRLD--EPDSGTA 332
Query: 63 IYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEIT-YALKKKIAIMLQR-TF 120
++ K D + + Y L++ + ++ Q T
Sbjct: 333 LW-----------------------------KGRDLFALSPAELYKLRRDLQMVFQDPTQ 363
Query: 121 ALYGEKTVAENIMEALTAAGYEGKDATEWALNLIKM-VKLEHRVAHISR---DLSGGEKQ 176
+L TV + I EA + +W + ++ V++ H+SR SGG++Q
Sbjct: 364 SLNPRMTVYQLISEAWVIHP-DILPKAKWRERVAELLVQVGLSAEHMSRYPHQFSGGQRQ 422
Query: 177 RVVLARQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEEL 236
R+ +AR +A P + + DE LD V L + IA + +H V+ +
Sbjct: 423 RIAIARALALEPQLIICDEAVSALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDF 482
Query: 237 CQKAIWLDKGEMRLVGESKHVVE 259
+ + +GE+ +G + V +
Sbjct: 483 ADYVMVMQQGEVVELGTVREVFD 505