Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 344 a.a., amino acid transport sytem, ATP-binding protein from Phaeobacter inhibens DSM 17395

 Score =  126 bits (317), Expect = 1e-33
 Identities = 73/224 (32%), Positives = 129/224 (57%), Gaps = 11/224 (4%)

Query: 296 GIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSKGNYEFRLADEWVDMTK 355
           GI+ AV    + I E EIF ++G+SG+GK+TL + ++ +I P+ G   F    + VD+  
Sbjct: 39  GIIGAVRDARIDIAEGEIFIIMGLSGSGKSTLVRCLSRLIEPTGGQVLF----DGVDLLT 94

Query: 356 VGPLYRGRAKRY-IGMLFQEYSLYPHRTILYNLTESIGLE-MPGEFAKMKAEHTLVSVGF 413
                    +R+ +GM+FQ ++L PH T+L N+   + ++ +P   A++KA   +  VG 
Sbjct: 95  ASEQELIEIRRHKMGMVFQHFALLPHLTVLQNVMFPLTVQAVPKSEAEVKAREVVELVGL 154

Query: 414 TEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGTMDPITRNQVAESIQK 473
              E     + +P ELS G++ RV +A+ L+ EP L  LDEP   +DP+ R ++ +   +
Sbjct: 155 KGRE-----DYYPRELSGGQQQRVGIARSLVTEPDLWFLDEPFSALDPLIRREMQDEFLR 209

Query: 474 SRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIV 517
            ++ L +T V ++HD +  + + DR A+++ G II+   P+E+V
Sbjct: 210 LQARLHKTIVFITHDFEEAVRLADRIAIMKDGHIIQIATPEELV 253



 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 57/227 (25%), Positives = 105/227 (46%), Gaps = 31/227 (13%)

Query: 19  LKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQIIYHVAYCPHCENVEAP 78
           +++   ++ EG++  ++G SG+GKS L+  L  +   EPT GQ+++        + V+  
Sbjct: 44  VRDARIDIAEGEIFIIMGLSGSGKSTLVRCLSRL--IEPTGGQVLF--------DGVDLL 93

Query: 79  SQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFALYGEKTVAENIMEALTA 138
           +                    +  E+    + K+ ++ Q  FAL    TV +N+M  LT 
Sbjct: 94  TA-------------------SEQELIEIRRHKMGMVFQH-FALLPHLTVLQNVMFPLTV 133

Query: 139 AGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLARQIAKNPVIFLADEPTG 198
                 +A   A  ++++V L+ R  +  R+LSGG++QRV +AR +   P ++  DEP  
Sbjct: 134 QAVPKSEAEVKAREVVELVGLKGREDYYPRELSGGQQQRVGIARSLVTEPDLWFLDEPFS 193

Query: 199 TLDPKTAKFVHNALTEAVIK-HNIAMVITSHWPEVIEELCQKAIWLD 244
            LDP   + + +       + H   + IT  + E +    + AI  D
Sbjct: 194 ALDPLIRREMQDEFLRLQARLHKTIVFITHDFEEAVRLADRIAIMKD 240