Pairwise Alignments

Query, 531 a.a., methyl coenzyme M reductase system component A2 from Methanococcus maripaludis S2

Subject, 378 a.a., spermidine/putrescine ABC transporter ATPase subunit (RefSeq) from Shewanella loihica PV-4

 Score =  127 bits (320), Expect = 6e-34
 Identities = 83/252 (32%), Positives = 137/252 (54%), Gaps = 20/252 (7%)

Query: 280 LLKLENVEKRYVSVDRGIVKAVDGIDVSINEKEIFGLVGVSGAGKTTLSKIIAAVIPPSK 339
           LLK+E V K +  V     +AVD + ++IN  EIF L+G SG+GK+TL +++A    P++
Sbjct: 20  LLKIERVSKLFDDV-----RAVDDVSLNINRGEIFALLGGSGSGKSTLLRMLAGFEKPTE 74

Query: 340 GNYEFRLADEWVDMTKVGPLYRGRAKRYIGMLFQEYSLYPHRTILYNLTESIGLE-MPGE 398
           G    R+  +  D+T + P      +R I M+FQ Y+L+PH T+  N+   +  + MP  
Sbjct: 75  G----RIYLDGQDITDMPPY-----ERPINMMFQSYALFPHMTVAQNIAFGLKQDKMPKA 125

Query: 399 FAKMKAEHTLVSVGFTEEEAENMLEKHPSELSVGEKHRVALAQVLIREPHLILLDEPTGT 458
             + + +  L  V       E   ++ P++LS G++ RVALA+ L + P L+LLDEP G 
Sbjct: 126 EIEQRVKEMLKLV-----HMEPYAKRKPNQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 180

Query: 459 MDPITRNQVAESIQKSRSELDQTYVIVSHDMDFVLNVCDRAALVRGGKIIKTGKPDEIVK 518
           +D   R Q+   +      +  T V+V+HD +  + + +R A++  G I +TG P +I +
Sbjct: 181 LDKKLRTQMQLEVVDILEAVGVTCVMVTHDQEEAMTMAERIAIMNDGWIAQTGSPMDIYE 240

Query: 519 ILSEEEKDEMIG 530
             +     E IG
Sbjct: 241 SPANRMVAEFIG 252



 Score =  100 bits (249), Expect = 9e-26
 Identities = 82/314 (26%), Positives = 141/314 (44%), Gaps = 46/314 (14%)

Query: 2   LLLEVKNVSKSYGDTEVLKNVSFELNEGDVMGVLGRSGAGKSVLLHMLRGMEGYEPTSGQ 61
           +LL+++ VSK + D   + +VS  +N G++  +LG SG+GKS LL ML G E  +PT G+
Sbjct: 19  VLLKIERVSKLFDDVRAVDDVSLNINRGEIFALLGGSGSGKSTLLRMLAGFE--KPTEGR 76

Query: 62  IIYHVAYCPHCENVEAPSQVGKKCECETEYVAKSVDFWNNNEITYALKKKIAIMLQRTFA 121
           I     Y    +  + P                              ++ I +M Q ++A
Sbjct: 77  I-----YLDGQDITDMPPY----------------------------ERPINMMFQ-SYA 102

Query: 122 LYGEKTVAENIMEALTAAGYEGKDATEWALNLIKMVKLEHRVAHISRDLSGGEKQRVVLA 181
           L+   TVA+NI   L        +  +    ++K+V +E         LSGG++QRV LA
Sbjct: 103 LFPHMTVAQNIAFGLKQDKMPKAEIEQRVKEMLKLVHMEPYAKRKPNQLSGGQRQRVALA 162

Query: 182 RQIAKNPVIFLADEPTGTLDPKTAKFVHNALTEAVIKHNIAMVITSHWPEVIEELCQKAI 241
           R +AK P + L DEP G LD K    +   + + +    +  V+ +H  E    + ++  
Sbjct: 163 RSLAKRPKLLLLDEPMGALDKKLRTQMQLEVVDILEAVGVTCVMVTHDQEEAMTMAERIA 222

Query: 242 WLDKGEMRLVGESKHVVEE-----FMKTVTSMKEFEKVEVKDE----LLKLENVEKRYVS 292
            ++ G +   G    + E        + + S+  FE   V+DE    ++ + N+ + +  
Sbjct: 223 IMNDGWIAQTGSPMDIYESPANRMVAEFIGSVNLFEGDIVEDEVDHVVINVANIPQPFY- 281

Query: 293 VDRGIVKAVDGIDV 306
           V  G+  +VD   V
Sbjct: 282 VGYGVSTSVDTTQV 295