Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis S2

Subject, 366 a.a., RecA DNA recombination protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 46/207 (22%), Positives = 98/207 (47%), Gaps = 19/207 (9%)

Query: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67
           G + +  I +IYGP   GKT + +  + +A + G    ++D E +      ++L G   D
Sbjct: 65  GGLPRGRIVEIYGPESSGKTTLALHVVAEAQKKGGQCAFVDAEHAFDPLYARKL-GVSLD 123

Query: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLEL-CDKINENTKLN- 124
           +LL    + +P + E+  E  + +     + +++ID + +L  + EL  D  + +  L  
Sbjct: 124 DLL----VSQPDTGEQALEIADTLVRSGAIDVLVIDSVAALVPKAELEGDMGDSHVGLQA 179

Query: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSI-----NGIEPAGGRLLEYWSKSIIKIEKS 179
           R++ + +  L     + N+ I+  NQ++  I     N     GG  L++++   ++++  
Sbjct: 180 RLMSQALRKLTGTVSRSNTLIIFINQIRMKIGVMFGNPETTTGGNALKFYAS--VRLD-- 235

Query: 180 ESIRKLTLEKHRHAKEGENLRFKILQN 206
             IR++   K +    G   R K+++N
Sbjct: 236 --IRRIGAVKDKEEVVGNQTRVKVVKN 260