Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis S2

Subject, 355 a.a., protein recA (recombinase A) from Phaeobacter inhibens DSM 17395

 Score = 53.5 bits (127), Expect = 5e-12
 Identities = 48/207 (23%), Positives = 97/207 (46%), Gaps = 19/207 (9%)

Query: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67
           G +    I +IYGP   GKT + +  + +  + G    ++D E +L  +   +L G D D
Sbjct: 65  GGLPMGRIVEIYGPESSGKTTLTLHCIAEQQKKGGVCAFVDAEHALDPQYAAKL-GVDLD 123

Query: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLY-RLELCDKINENT--KLN 124
           ELL    I +P + E+  E  + +     V ++I+D + +L  + EL   + +++     
Sbjct: 124 ELL----ISQPDTGEQALEITDTLVRSGAVNMVIVDSVAALTPKSELEGDMGDSSVGVQA 179

Query: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSINGI-----EPAGGRLLEYWSKSIIKIEKS 179
           R++ + +  L     + N  ++  NQ++  I  +        GG  L+++S   ++++  
Sbjct: 180 RLMSQAMRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYSS--VRLD-- 235

Query: 180 ESIRKLTLEKHRHAKEGENLRFKILQN 206
             IR++   K R    G   R K+++N
Sbjct: 236 --IRRIGAIKDRDEVVGNATRVKVVKN 260