Pairwise Alignments

Query, 216 a.a., DNA repair and recombination protein RadB from Methanococcus maripaludis S2

Subject, 357 a.a., recombinase A (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 56.2 bits (134), Expect = 8e-13
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 8   GNIEKKTITQIYGPPGVGKTNICIISMLKAIENGKNVVYIDTEGSLSIERIKQLSGKDCD 67
           G I +  +++IYGP   GKT + +  + +  + G    +ID E +L     ++L G   D
Sbjct: 61  GGIPRGRVSEIYGPESSGKTTLALHIIAECQKLGGTAAFIDAEHALDTNYARRL-GVKTD 119

Query: 68  ELLKNIIIYEPSSFEEQSEALEKIFLLENVGLIIIDGIVSLYRLELCDKINENTKLN--- 124
           ELL    I +P   E+  +  + +     V +++ID + +L      + +    ++    
Sbjct: 120 ELL----ISQPDFGEQALDIADMLVRSSAVDIVVIDSVAALIPQAELEGVMGEMQVGGQA 175

Query: 125 RMLGKQISNLLKVSRQKNSGILITNQVKDSI------NGIEPAGGRLLEYWSKSIIKIEK 178
           R++   +  L     +  + ++  NQ++  I      N     GG  L+++S   I+++ 
Sbjct: 176 RLMSHALRKLTGTIHKSRTAVIFINQIRMKIGTMGYGNPETTTGGNALKFYSS--IRMD- 232

Query: 179 SESIRKLTLEKHRHAKEGENLRFKILQN 206
              IRK+   K +    G   R K+++N
Sbjct: 233 ---IRKIQTLKDKEEVYGSRTRVKVVKN 257