Pairwise Alignments

Query, 430 a.a., tRNA pseudouridine(13) synthase TruD from Methanococcus maripaludis S2

Subject, 355 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score = 75.5 bits (184), Expect = 2e-18
 Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 59  LKKYPEDFIVEEITPEGTVLEVGKEIGFEDVEKWHGSFIHFTVEKTNWNTMDALKQIVRA 118
           L+ Y  DFIV+EI P    L  G+           G      + K   NT D  + +   
Sbjct: 17  LRTYNSDFIVQEILP---FLPTGE-----------GEHHMLHIRKEGLNTADVARMLSSF 62

Query: 119 TKTKRKNFGFAGTKDKFAVTTQRFGCF--GLKKEQLENINIKDIVIRDVQKTNKKLRMGG 176
                K   FAG KD+ A+T Q FG    G      +++N + + +    +  KKLR G 
Sbjct: 63  AGVHPKEVTFAGQKDRHAITEQWFGVRIPGKSMPDWQSLNSEQLTVLSSARHGKKLRTGA 122

Query: 177 LWGNKFTIKIRDLNLSEKEIKRISDLKLDYVLNYYGIQRFG 217
           L GN+FT+ +R ++  +  ++RI  +K   V NY+G QRFG
Sbjct: 123 LAGNRFTLTLRAVSDMDALVRRIELIKATGVPNYFGEQRFG 163



 Score = 25.8 bits (55), Expect = 0.002
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 22/142 (15%)

Query: 305 SMFVNAYQAYLFNEMINKRFD-YGFDELEGDILE-------------DNTPTGTLIGYDT 350
           S++++A ++YLFN+++++R   +    L+GD +              D +  G L   D 
Sbjct: 189 SIYLSAVRSYLFNQVVSERLRLHQLKTLDGDCVMLAGSKSYFVANPWDESLYGRLAENDI 248

Query: 351 KFSGGIQGE----IEKEIVERENLDLKKFKIEDFG----NFYGTRRKMVTPIYDFKSRFE 402
           + S  + G      E E +  E     ++  +  G         RR ++          +
Sbjct: 249 QLSAPMWGRGLALSEAEALAFEQGVCGQYPEDLAGLEQAGLNQERRPLLLAPQQLSYEIQ 308

Query: 403 NEIFELSFKLERGNYATIVTRE 424
            +   + F L  G++AT V RE
Sbjct: 309 EDTLVIKFALPAGSFATSVLRE 330