Pairwise Alignments

Query, 174 a.a., RNA 2' 3'-cyclic phosphodiesterase from Methanococcus maripaludis S2

Subject, 175 a.a., putative 2'-5' RNA ligase (RefSeq) from Shewanella amazonensis SB2B

 Score = 39.7 bits (91), Expect = 3e-08
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 2   RCFLAIELKTDLKENLEVLKKQFNLKGIKTVEKENLHITVKFLGDIDDKKLE--EIVNSD 59
           R FL   L     E++  L+K+    G KTVEK NLH+T+ FLG    ++ +  E     
Sbjct: 6   RLFLGFALSDQEGESILKLQKRLGAPG-KTVEKANLHMTLAFLGQTSQRQCQRLEAALEG 64

Query: 60  LKIKKVISEIKGVGTFPNEEYIRVIWVGTTN--LQETFKNIDEKLFKLGF-KKEKSYDPH 116
           + + K    +  +  +     +  +W   T+  L + +         LG  + E  ++PH
Sbjct: 65  ITMPKFEQRLDSLVHWRGAGVV-CLWGQATDSGLTDLYHGCQSLCQNLGLHQSEHDFNPH 123

Query: 117 ITLGR 121
           ITL R
Sbjct: 124 ITLFR 128