Pairwise Alignments

Query, 174 a.a., RNA 2' 3'-cyclic phosphodiesterase from Methanococcus maripaludis S2

Subject, 199 a.a., 2',5' RNA ligase (NCBI) from Rhodospirillum rubrum S1H

 Score = 74.7 bits (182), Expect = 9e-19
 Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 11/173 (6%)

Query: 1   MRCFLAIELKTDLKENLEVLKKQFNLKGIKTVEKENLHITVKFLGDIDDKKLEEIVNSDL 60
           +R F+A+ L   L+  L  L+    + G +    +NLH+T++FLG+ ++    EI  + L
Sbjct: 2   VRLFIALTLDDSLRARLSGLEA--GIPGARWAPAQNLHVTLRFLGETEEGLAREIDAALL 59

Query: 61  KIK--KVISEIKGVGTFPNEEYIRVIWVG---TTNLQETFKNIDEKLFKLGF-KKEKSYD 114
            ++       I G+G F  E   R++W G   T  L      ID  L  LG    E  Y 
Sbjct: 60  SVRAEPFTLPIAGLGVFGGERRPRLLWAGVEKTPALTLLKGRIDAALRGLGVGPDEHVYS 119

Query: 115 PHITLGRVKFIENDSKETLKKLIEKNKHVNFGKIEINSVSLMKSTLTKNGPVY 167
           PHI+L R+K       E L++ +E N     G + + S SL  S LT  GP+Y
Sbjct: 120 PHISLARLK---TPDPERLRRFVEANNLSVRGSLTVTSFSLFSSLLTGEGPLY 169